RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SLC37A3Q8NCC5 494 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ABHD11Q8NFV4 315 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DENND1AQ8TEH3 1009 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DNAJC19Q96DA6 116 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 HSFY1Q96LI6 401 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PNMA5Q96PV4 448 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 FAM193BQ96PV7 902 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 FAM126AQ9BYI3 521 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GPR63Q9BZJ6 419 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TFCP2L1Q9NZI6 479 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NUDT4Q9NZJ9 180 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 HCN3Q9P1Z3 774 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CLCA2Q9UQC9 943 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NT5C1B-RDH14C9J2C7 533 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 BTN3A1O00481 513 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ARL6IP5O75915 188 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PRG2P13727 222 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CYP3A5P20815 502 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DDOSTP39656 456 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NCS1P62166 190 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 USF2Q15853 346 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 C1orf189Q5VU69 101 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RNF219Q5W0B1 726 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF772Q68DY9 489 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SV2AQ7L0J3 742 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 WDR53Q7Z5U6 358 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NECAB2Q7Z6G3 386 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 IZUMO1Q8IYV9 350 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DENND6BQ8NEG7 585 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 HEXDCQ8WVB3 486 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CPT1BQ92523 772 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TBL1YQ9BQ87 522 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NLNQ9BYT8 704 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TRIT1Q9H3H1 467 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RPS3P23396 243 aaKnown RBP eCLIP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DEFA5Q01523 94 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RAB41Q5JT25 222 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DCAKDQ8WVC6 231 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 KCNMB3Q9NPA1 279 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MYNNQ9NPC7 610 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PLA2G4CQ9UP65 541 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 USP17L10C9JJH3 530 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RFPL3O75679 317 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 IFNA4P05014 189 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SBK2P0C263 348 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 KCNA6P17658 529 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TNNI3P19429 210 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CXCR2P25025 360 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MGAT1P26572 445 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GRK4P32298 578 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 NNMTP40261 264 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GPR15P49685 360 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 FMO1Q01740 532 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CDNFQ49AH0 187 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SFT2D3Q587I9 215 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 KIAA1614Q5VZ46 1190 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 FIBCD1Q8N539 461 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TXNDC5Q8NBS9 432 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TERB2Q8NHR7 220 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 RHOXF1Q8NHV9 184 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 THAP6Q8TBB0 222 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TAS1R2Q8TE23 839 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SMG7Q92540 1137 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF597Q96LX8 424 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CKLFQ9UBR5 152 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ENPP5Q9UJA9 477 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 IRS2Q9Y4H2 1338 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 EI24O14681 340 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 OR6B1O95007 311 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PRKAR2AP13861 404 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TAF6P49848 677 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 KCNJ8Q15842 424 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SLC26A9Q7LBE3 791 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GPSM1Q86YR5 675 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 DYNLL2Q96FJ2 89 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 HPDLQ96IR7 371 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SDCBP2Q9H190 292 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MIEF1Q9NQG6 463 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ARPC2O15144 300 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TO15178 435 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CDC40O60508 579 aaKnown RBP eCLIP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TRUB2O95900 331 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF81P51508 661 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ARHGAP15Q53QZ3 475 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 XKR5Q6UX68 686 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM192Q8IY95 271 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PLD6Q8N2A8 252 aaKnown RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 SVBPQ8N300 66 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 CARNMT1Q8N4J0 409 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 GALNT11Q8NCW6 608 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF548Q8NEK5 533 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MSANTD3Q96H12 275 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PHB2Q99623 299 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 C3orf14Q9HBI5 128 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 ADGRB1O14514 1584 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 IFNA17P01571 189 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 IFNW1P05000 195 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 JUNBP17275 347 aaPredicted RBP4.63□□□□□ -1.67
SCN1A-220ENST00000641603 PRKCHP24723 683 aa4.63□□□□□ -1.67
SCN1A-220ENST00000641603 MAGEA3P43357 314 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms