RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 PRPSAP1Q14558 356 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 TAF1AQ15573 450 aaPredicted RBP18.98■□□□□ 0.63
CLN3-260ENST00000637578 DENND5AQ6IQ26 1287 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 MAIP1Q8WWC4 291 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 SEMA6CQ9H3T2 930 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 RDH14Q9HBH5 336 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 SARS2Q9NP81 518 aaKnown RBP18.98■□□□□ 0.63
CLN3-260ENST00000637578 SLC23A2Q9UGH3 650 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 SSUH2Q9Y2M2 353 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 PKP3Q9Y446 797 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 NBEAQ8NFP9 2946 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 PGRMC1O00264 195 aaKnown RBP18.98■□□□□ 0.63
CLN3-260ENST00000637578 KMOO15229 486 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 LIASO43766 372 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 MTX2O75431 263 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 CDK14O94921 469 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 TNFSF15O95150 251 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 CASQ1P31415 396 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 CFHR1Q03591 330 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 TLE3Q04726 772 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 TMEM115Q12893 351 aaPredicted RBP18.98■□□□□ 0.63
CLN3-260ENST00000637578 OLIG2Q13516 323 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 CHRNA6Q15825 494 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 AMZ1Q400G9 498 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 KCTD11Q693B1 232 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 C11orf96Q7Z7L8 435 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 PDZD3Q86UT5 571 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 LRRTM4Q86VH4 590 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 SPACA3Q8IXA5 215 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 FBXO39Q8N4B4 442 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 BRSK1Q8TDC3 778 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 C19orf43Q9BQ61 176 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 NUDT22Q9BRQ3 303 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 TIMM29Q9BSF4 260 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 FRMD8P1Q9BZ68 369 aaPredicted RBP18.98■□□□□ 0.63
CLN3-260ENST00000637578 KLC4Q9NSK0 619 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 SMOXQ9NWM0 555 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 PCDHGA7Q9Y5G6 932 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 ARL5AQ9Y689 179 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 SAR1BQ9Y6B6 198 aa18.98■□□□□ 0.63
CLN3-260ENST00000637578 TRBV23OR9-2A0A075B6M9 112 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 KIR2DS5A0A0G2JLQ3 304 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 A0A0G2JNG1 304 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 GLYATL1P3A0A0U1RQE8 302 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 OR5K4A6NMS3 321 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 KIR2DS3K7RE56 304 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 BUD23O43709 281 aaKnown RBP18.97■□□□□ 0.63
CLN3-260ENST00000637578 SLC2A4P14672 509 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 ZNF7P17097 686 aaPredicted RBP18.97■□□□□ 0.63
CLN3-260ENST00000637578 LPOP22079 712 aaPredicted RBP18.97■□□□□ 0.63
CLN3-260ENST00000637578 CA5AP35218 305 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 GPLD1P80108 840 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 BIRC2Q13490 618 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 SNX1Q13596 522 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 KIR2DS5Q14953 304 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 PARP6Q2NL67 630 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 USP53Q70EK8 1073 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 FAM71DQ8N9W8 422 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 ACTRT1Q8TDG2 376 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 APOL2Q9BQE5 337 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 PRDM8Q9NQV8 689 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 KCNK4Q9NYG8 393 aa18.97■□□□□ 0.63
CLN3-260ENST00000637578 STX7O15400 261 aaKnown RBP18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A9O60656 530 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 HOXB3P14651 431 aaPredicted RBP18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A6P19224 532 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A1P22309 533 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A4P22310 534 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A3P35503 534 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 HHEXQ03014 270 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 ITGA9Q13797 1035 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 PTPRCAPQ14761 206 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 OASLQ15646 514 aaKnown RBP18.96■□□□□ 0.63
CLN3-260ENST00000637578 CCNG2Q16589 344 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 MAP9Q49MG5 647 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 FOXR1Q6PIV2 292 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 CRTC3Q6UUV7 619 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 FAM151BQ6UXP7 276 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 SLC9B2Q86UD5 537 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 PRELID2Q8N945 189 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 DDHD1Q8NEL9 900 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 OR4D9Q8NGE8 314 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 RTP4Q96DX8 246 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 CRELD1Q96HD1 420 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 NAP1L3Q99457 506 aaPredicted RBP18.96■□□□□ 0.63
CLN3-260ENST00000637578 DPYSL5Q9BPU6 564 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 TBL1YQ9BQ87 522 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 TMEM121Q9BTD3 319 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 DPH1Q9BZG8 443 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 PRORYQ9H606 182 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A7Q9HAW7 530 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A10Q9HAW8 530 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 UGT1A8Q9HAW9 530 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 PDP2Q9P2J9 529 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 FEZ2Q9UHY8 353 aaPredicted RBP18.96■□□□□ 0.63
CLN3-260ENST00000637578 ACSL6Q9UKU0 697 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 LOXL2Q9Y4K0 774 aa18.96■□□□□ 0.63
CLN3-260ENST00000637578 IGHV5-10-1A0A0J9YXX1 117 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 C2orf81A6NN90 581 aa18.95■□□□□ 0.62
CLN3-260ENST00000637578 METTL18O95568 372 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms