RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ZFAND5O76080 213 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 MLYCDO95822 493 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 EDN1P05305 212 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 NFKBIAP25963 317 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 HOXC9P31274 260 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 PSMC2P35998 433 aaKnown RBP2.55□□□□□ -2
SCN1A-208ENST00000625916 ARL4CP56559 192 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 EFR3AQ14156 821 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 SPICE1Q8N0Z3 855 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 ZNF611Q8N823 705 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 PPP4R1Q8TF05 950 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 TMEM143Q96AN5 459 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 KIF1BPQ96EK5 621 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 PRAC1Q96KF2 57 aa2.55□□□□□ -2
SCN1A-208ENST00000625916 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 A0A087WW49 117 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 NADKO95544 446 aaPredicted RBP2.54□□□□□ -2
SCN1A-208ENST00000625916 LIPFP07098 398 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 PRG2P13727 222 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 UBA1P22314 1058 aaKnown RBP2.54□□□□□ -2
SCN1A-208ENST00000625916 EPHA2P29317 976 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 CDAP32320 146 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 WNT5AP41221 380 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 SNX16P57768 344 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 FGFBP1Q14512 234 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 FBXO47Q5MNV8 452 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 Q6ZSR9 355 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 BBS12Q6ZW61 710 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 RSRC2Q7L4I2 434 aaKnown RBP2.54□□□□□ -2
SCN1A-208ENST00000625916 ISCA2Q86U28 154 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 PAF1Q8N7H5 531 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 CCT6BQ92526 530 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 GIMAP5Q96F15 307 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 FOXN4Q96NZ1 517 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 SMC6Q96SB8 1091 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 PIGQQ9BRB3 760 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 PELI2Q9HAT8 420 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 LTB4R2Q9NPC1 389 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 ITM2CQ9NQX7 267 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 SLC6A13Q9NSD5 602 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 TAGLN3Q9UI15 199 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 MOB4Q9Y3A3 225 aa2.54□□□□□ -2
SCN1A-208ENST00000625916 PRAG1Q86YV5 1406 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 PCNX3Q9H6A9 2034 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 IGHV4-4A0A075B6R2 117 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 LRRC53A6NM62 1247 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 C15orf62A8K5M9 175 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 PI15O43692 258 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 SEC31AO94979 1220 aaKnown RBP2.53□□□□□ -2
SCN1A-208ENST00000625916 NGFP01138 241 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 GRK6P43250 576 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 SP3Q02447 781 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 UBE3AQ05086 875 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 DCTN2Q13561 401 aaKnown RBP2.53□□□□□ -2
SCN1A-208ENST00000625916 PDE1CQ14123 709 aaPredicted RBP2.53□□□□□ -2
SCN1A-208ENST00000625916 SLC9B1Q4ZJI4 515 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 LINC00612Q8N6U2 182 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 ZCCHC10Q8TBK6 192 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 IGSF8Q969P0 613 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 TBC1D20Q96BZ9 403 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 RRNAD1Q96FB5 475 aaKnown RBP2.53□□□□□ -2
SCN1A-208ENST00000625916 SLX1AQ9BQ83 275 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 RTP3Q9BQQ7 232 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 SIL1Q9H173 461 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 KIF9Q9HAQ2 790 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 MPP6Q9NZW5 540 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 SLC25A10Q9UBX3 287 aaPredicted RBP2.53□□□□□ -2
SCN1A-208ENST00000625916 STK39Q9UEW8 545 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 OR14J1Q9UGF5 321 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 KLK13Q9UKR3 277 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 RABGAP1Q9Y3P9 1069 aa2.53□□□□□ -2
SCN1A-208ENST00000625916 EIF4E1BA6NMX2 242 aaKnown RBP2.52□□□□□ -2.01
SCN1A-208ENST00000625916 BMP10O95393 424 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 RAF1P04049 648 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 CEBPBP17676 345 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.52□□□□□ -2.01
SCN1A-208ENST00000625916 GRAPQ13588 217 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 RRS1Q15050 365 aaKnown RBP2.52□□□□□ -2.01
SCN1A-208ENST00000625916 ALG11Q2TAA5 492 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 NDUFAF5Q5TEU4 345 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 PAQR6Q6TCH4 344 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 Q75L30 129 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 OR2L2Q8NH16 312 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 OR14L1PQ8NHC6 308 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 MAGED4Q96JG8 741 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 PPP1R13BQ96KQ4 1090 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 SEMA3CQ99985 751 aa2.52□□□□□ -2.01
SCN1A-208ENST00000625916 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP2.52□□□□□ -2.01
SCN1A-208ENST00000625916 PALM2-AKAP2B1ALY0 433 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 LDLRAD4O15165 306 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 WISP2O76076 250 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 AP2A2O94973 939 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 CSPG5O95196 566 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 DUS4LO95620 317 aaKnown RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 IFIT1P09914 478 aaKnown RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 IL7RP16871 459 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 ZNF182P17025 639 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 CEACAM8P31997 349 aaPredicted RBP2.51□□□□□ -2.01
SCN1A-208ENST00000625916 GGT5P36269 586 aa2.51□□□□□ -2.01
SCN1A-208ENST00000625916 MS4A2Q01362 244 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms