RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ENKURQ8TC29 256 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 BRSK1Q8TDC3 778 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 XAGE5Q8WWM1 108 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 SIPA1Q96FS4 1042 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 SH3GL2Q99962 352 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 TAPBPLQ9BX59 468 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PNPOQ9NVS9 261 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 PACSIN3Q9UKS6 424 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 RAB21Q9UL25 225 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 FMN2Q9NZ56 1722 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 SLIT2O94813 1529 aa11.29□□□□□ -0.6
CLIP1-219ENST00000620786 LOC100506127A0A0U1RQW1 187 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 UNCXA6NJT0 531 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 KIF1CO43896 1103 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 MT-CYBP00156 380 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ALDH4A1P30038 563 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 PGDP52209 483 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 RTL4Q6ZR62 310 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 DHDDSQ86SQ9 333 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 OAFQ86UD1 273 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 EIF1ADQ8N9N8 165 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 SUN3Q8TAQ9 357 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 MYDGFQ969H8 173 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 FZD8Q9H461 694 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 IPPKQ9H8X2 491 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 PAIP2BQ9ULR5 123 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 MAP4K5Q9Y4K4 846 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 STON1Q9Y6Q2 735 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 MYO5BQ9ULV0 1848 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 MFN2O95140 757 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ANXA4P09525 319 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ALOX12P18054 663 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 SUZ12Q15022 739 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ZNF730Q6ZMV8 503 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 CAMK1DQ8IU85 385 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 DEFB119Q8N690 84 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 NXNL1Q96CM4 212 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 DPYSL5Q9BPU6 564 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 KIFC1Q9BW19 673 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 RNF186Q9NXI6 227 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 SEC14L3Q9UDX4 400 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 SPATA2Q9UM82 520 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 MAGEB3O15480 346 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 DHX15O43143 795 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 UBXN7O94888 489 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 TMED10P49755 219 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 FSTL1Q12841 308 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 PLEKHG4Q58EX7 1191 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 CLEC4CQ8WTT0 213 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 RCN3Q96D15 328 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 BAZ2BQ9UIF8 2168 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 YJEFN3A6XGL0 299 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 IPO13O94829 963 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 CD48P09326 243 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ACTR1BP42025 376 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ACTR3P61158 418 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ACTR1AP61163 376 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 CCNIQ14094 377 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 GRM2Q14416 872 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 RFTN2Q52LD8 501 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 GCNT6Q5T4J0 391 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 TSTD2Q5T7W7 516 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 FAM91A1Q658Y4 838 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 GDPD4Q6W3E5 623 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 GALNT7Q86SF2 657 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 CLVS1Q8IUQ0 354 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 HCAR2Q8TDS4 363 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 TFAP2BQ92481 460 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 SUSD3Q96L08 255 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 CRISPLD1Q9H336 500 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 SH3GLB1Q9Y371 365 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 IQCMA0A1B0GVH7 501 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 FGF18O76093 207 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 C8GP07360 202 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 PSMD4P55036 377 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 CYP4F3Q08477 520 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 TEAD2Q15562 447 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 TIMM50Q3ZCQ8 353 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 TTMPQ5BVD1 217 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 KLHL17Q6TDP4 642 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 AMZ2Q86W34 360 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 HEATR4Q86WZ0 1026 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 FNIP1Q8TF40 1166 aa11.28□□□□□ -0.6
CLIP1-219ENST00000620786 SETD7Q8WTS6 366 aaKnown RBP11.28□□□□□ -0.6
CLIP1-219ENST00000620786 ROBO1Q9Y6N7 1651 aa11.27□□□□□ -0.6
CLIP1-219ENST00000620786 HMGB3O15347 200 aaKnown RBP11.27□□□□□ -0.6
CLIP1-219ENST00000620786 TBX18O95935 607 aa11.27□□□□□ -0.6
CLIP1-219ENST00000620786 PRKCGP05129 697 aa11.27□□□□□ -0.6
CLIP1-219ENST00000620786 MYL9P24844 172 aa11.27□□□□□ -0.6
CLIP1-219ENST00000620786 CCNFP41002 786 aa11.27□□□□□ -0.6
CLIP1-219ENST00000620786 CASRP41180 1078 aa11.27□□□□□ -0.6
CLIP1-219ENST00000620786 GRASPQ7Z6J2 395 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-219ENST00000620786 RAB11FIP5Q9BXF6 653 aa11.27□□□□□ -0.6
CLIP1-219ENST00000620786 A0A1W2PPM1 405 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 TP73O15350 636 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 DDX3YO15523 660 aaKnown RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 FAM155BO75949 473 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 SAGP10523 405 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-219ENST00000620786 AGXTP21549 392 aa11.27□□□□□ -0.61
CLIP1-219ENST00000620786 MPSTP25325 297 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms