RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SOCS5O75159 536 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 KAT7O95251 611 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 PCCBP05166 539 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 IHHQ14623 411 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 CPSF6Q16630 551 aaKnown RBP eCLIP15.57■□□□□ 0.082e-9■■■■■ 35
CPSF1-213ENST00000620219 BRAT1Q6PJG6 821 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 CRTC1Q6UUV9 634 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 RINLQ6ZS11 566 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 TREML1Q86YW5 311 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 CENPLQ8N0S6 344 aaPredicted RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 OR56A4Q8NGH8 313 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 SLC26A7Q8TE54 656 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 OR52B2Q96RD2 323 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 RANBP9Q96S59 729 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 GAS2L1Q99501 681 aaPredicted RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 IL17CQ9P0M4 197 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 KLQ9UEF7 1012 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 TAGLN3Q9UI15 199 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 PRKAB1Q9Y478 270 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 PCDHB1Q9Y5F3 818 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 NVLO15381 856 aaKnown RBP15.57■□□□□ 0.08
CPSF1-213ENST00000620219 ASLP04424 464 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 PSMC3P17980 439 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 ATP13A5Q4VNC0 1218 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 IL27RAQ6UWB1 636 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 ADAMTSL2Q86TH1 951 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 AGAP11Q8TF27 550 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 CDK15Q96Q40 435 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 IL26Q9NPH9 171 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 DZANK1Q9NVP4 752 aa15.57■□□□□ 0.08
CPSF1-213ENST00000620219 MICAL3Q7RTP6 2002 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 CHUKO15111 745 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ANGPT2O15123 496 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 SIN3BO75182 1162 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 FAM46CQ5VWP2 391 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 UBE2R2Q712K3 238 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-213ENST00000620219 PYCR2Q96C36 320 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ZDHHC2Q9UIJ5 367 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 SLCO1B7G3V0H7 640 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ZNF37AP17032 561 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ITPKAP23677 461 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 IDH3AP50213 366 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 DMC1Q14565 340 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 VITQ6UXI7 678 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 HDDC3Q8N4P3 179 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ZNF276Q8N554 614 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ACAT2Q9BWD1 397 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 MRPL1Q9BYD6 325 aaKnown RBP15.56■□□□□ 0.08
CPSF1-213ENST00000620219 TMEM114B3SHH9 223 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 NR5A2O00482 541 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 AXIN1O15169 862 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 TGDSO95455 350 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 PRLP01236 227 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 NSG1P42857 185 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 GDF5P43026 501 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 PRKAA2P54646 552 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ERVK-21P61565 698 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 ASTLQ6HA08 431 aaPredicted RBP15.56■□□□□ 0.08
CPSF1-213ENST00000620219 Q6ZNB5 142 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 MFSD6LQ8IWD5 586 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 C1orf50Q9BV19 199 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 OR2AG1Q9H205 316 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 KCNK13Q9HB14 408 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 CDH7Q9ULB5 785 aa15.56■□□□□ 0.08
CPSF1-213ENST00000620219 DNTTP04053 509 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 ANXA5P08758 320 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 VCLP18206 1134 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 DLG1Q12959 904 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 KPNB1Q14974 876 aaKnown RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 TCHHL1Q5QJ38 904 aaPredicted RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 GPRC6AQ5T6X5 926 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 TMEM220Q6QAJ8 160 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 DEFB107AQ8IZN7 70 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 RBM15BQ8NDT2 890 aaKnown RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 INPP5DQ92835 1189 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 ATXN2Q99700 1313 aaKnown RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 ECI2O75521 394 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 PREPLQ4J6C6 727 aaPredicted RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 FNDC5Q8NAU1 212 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 PSMD13Q9UNM6 376 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 VWA8A3KMH1 1905 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 NRG2O14511 850 aaPredicted RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 CYP2A7P20853 494 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 POLD2P49005 469 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 GRIN2CQ14957 1233 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 MUM1Q2TAK8 710 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 ITPRIPL2Q3MIP1 535 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 CFAP206Q8IYR0 622 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 PHTF2Q8N3S3 785 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 GPR26Q8NDV2 337 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 GIMAP7Q8NHV1 300 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 PPWD1Q96BP3 646 aaKnown RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 ZBTB18Q99592 522 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 TAS2R1Q9NYW7 299 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 TXNDC9O14530 226 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 WNT9AO14904 365 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 AGTR2P50052 363 aa15.55■□□□□ 0.08
CPSF1-213ENST00000620219 GTF2A1P52655 376 aaPredicted RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 CYLC2Q14093 348 aaPredicted RBP15.55■□□□□ 0.08
CPSF1-213ENST00000620219 ANGPTL8Q6UXH0 198 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms