RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 JCHAINP01591 159 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 CCDC172P0C7W6 258 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 BRAFP15056 766 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF30P17039 623 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 AMD1P17707 334 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 NFKBIAP25963 317 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 COL8A1P27658 744 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 CA5AP35218 305 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 SERPINB6P35237 376 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF165P49910 485 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 ARSEP51690 589 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 TAS2R40P59535 323 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 GALNT2Q10471 571 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 ZBTB17Q13105 803 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 PEX6Q13608 980 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 DPYSL3Q14195 570 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 NOMO1Q15155 1222 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 PCSK7Q16549 785 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 STX1AQ16623 288 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 INSCQ1MX18 579 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 NADK2Q4G0N4 442 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 BOLA3Q53S33 107 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 CCDC122Q5T0U0 273 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 FHL5Q5TD97 284 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 C1QL3Q5VWW1 255 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 IRGCQ6NXR0 463 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 FBXO38Q6PIJ6 1188 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 MAMDC2Q7Z304 686 aaPredicted RBP8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 ADGRG6Q86SQ4 1221 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 PHYKPLQ8IUZ5 450 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 TRIM48Q8IWZ4 208 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 MAML1Q92585 1016 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 STAMBPL1Q96FJ0 436 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 HERPUD2Q9BSE4 406 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 NUP85Q9BW27 656 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 BPIFA1Q9NP55 256 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 RTN4Q9NQC3 1192 aaKnown RBP8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 CUEDC1Q9NWM3 386 aaPredicted RBP8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 VPS18Q9P253 973 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 WDR37Q9Y2I8 494 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 ADGRG1Q9Y653 693 aa8.51□□□□□ -1.05
SHKBP1-220ENST00000599716 ESPL1Q14674 2120 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 IGHV5-51A0A0C4DH38 117 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 KIR2DS5A0A0G2JLQ3 304 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 A0A0G2JNG1 304 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 WIPF3A6NGB9 483 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 LILRA5A6NI73 299 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 TTLL8A6PVC2 850 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 F5H423 210 aaPredicted RBP8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 MKRN2OSH3BPM6 223 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 KIR2DS3K7RE56 304 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 AURKAO14965 403 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 MATN3O15232 486 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 SLC25A14O95258 325 aaPredicted RBP8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 VIPP01282 170 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 C9P02748 559 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 GZMAP12544 262 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 FOLR1P15328 257 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 CASP14P31944 242 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 MAN1A1P33908 653 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF135P52742 658 aaPredicted RBP8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 EPHA4P54764 986 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 DNASE1L3Q13609 305 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 GPR18Q14330 331 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 KIR2DS5Q14953 304 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 ANKRD20A8PQ5CZ79 823 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 RALGPS1Q5JS13 557 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PRAMEF17Q5VTA0 474 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 CACHD1Q5VU97 1274 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 ALG1LQ6GMV1 187 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PWWP2BQ6NUJ5 590 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 TMEM26Q6ZUK4 368 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 NLRP8Q86W28 1048 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PLXDC1Q8IUK5 500 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 ZNF547Q8IVP9 402 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 CCDC13Q8IYE1 715 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 NDUFAF2Q8N183 169 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PQLC3Q8N755 202 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 CNTD1Q8N815 330 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 CCNYQ8ND76 341 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 GPR150Q8NGU9 434 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 TEKT4Q8WW24 435 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 SH3KBP1Q96B97 665 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PPM1MQ96MI6 270 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 ZPBPQ9BS86 351 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 EFHD1Q9BUP0 239 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 MLPHQ9BV36 600 aaPredicted RBP8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 ISCUQ9H1K1 167 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 CARD9Q9H257 536 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 ACTL8Q9H568 366 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 MRPL47Q9HD33 250 aaKnown RBP8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PKD2L2Q9NZM6 624 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 AIPL1Q9NZN9 384 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 KCND3Q9UK17 655 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 TMPRSS11EQ9UL52 423 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PSMD13Q9UNM6 376 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 POLHQ9Y253 713 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 KCTD3Q9Y597 815 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 PCDHB3Q9Y5E6 796 aa8.5□□□□□ -1.05
SHKBP1-220ENST00000599716 A0A087X0T9 212 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms