RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 SNIP1Q8TAD8 396 aaKnown RBP13.96□□□□□ -0.17
LIG1-218ENST00000599322 SLC35B2Q8TB61 432 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 HEXDCQ8WVB3 486 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 ULK4Q96C45 1275 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 TMEM121Q9BTD3 319 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 ASB8Q9H765 288 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 GRPEL1Q9HAV7 217 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 SARS2Q9NP81 518 aaKnown RBP13.96□□□□□ -0.17
LIG1-218ENST00000599322 RABGEF1Q9UJ41 708 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 CRLS1Q9UJA2 301 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 ATXN7L1Q9ULK2 861 aaPredicted RBP13.96□□□□□ -0.17
LIG1-218ENST00000599322 SLC30A1Q9Y6M5 507 aa13.96□□□□□ -0.17
LIG1-218ENST00000599322 LRP4O75096 1905 aa13.96□□□□□ -0.18
LIG1-218ENST00000599322 A0A087WV48 116 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 A0A1W2PQM1 296 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 KLHL33A6NCF5 533 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 ERI2A8K979 691 aaKnown RBP13.95□□□□□ -0.18
LIG1-218ENST00000599322 DUX1O43812 170 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 VIPP01282 170 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 ITGALP20701 1170 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 FDFT1P37268 417 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 FASLGP48023 281 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 B4GALNT1Q00973 533 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 TRA2AQ13595 282 aaKnown RBP eCLIP13.95□□□□□ -0.18
LIG1-218ENST00000599322 ZNF648Q5T619 568 aaPredicted RBP13.95□□□□□ -0.18
LIG1-218ENST00000599322 ZNF449Q6P9G9 518 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 IYDQ6PHW0 289 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 IGF2-ASQ6U949 168 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 C4orf22Q6V702 233 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 PPP1R21Q6ZMI0 780 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 USP53Q70EK8 1073 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 GSTA5Q7RTV2 222 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 ZNF438Q7Z4V0 828 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 SFRP1Q8N474 314 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 DNAAF3Q8N9W5 541 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 SLC37A2Q8TED4 501 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 PATE1Q8WXA2 126 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 C19orf43Q9BQ61 176 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 FOXP3Q9BZS1 431 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 EPB41L1Q9H4G0 881 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 HOMER3Q9NSC5 361 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 WDR70Q9NW82 654 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 TBC1D29Q9UFV1 150 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 DNAJC16Q9Y2G8 782 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 ARL5AQ9Y689 179 aa13.95□□□□□ -0.18
LIG1-218ENST00000599322 DNMT3AQ9Y6K1 912 aaPredicted RBP13.95□□□□□ -0.18
LIG1-218ENST00000599322 ASXL3Q9C0F0 2248 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 CHUKO15111 745 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 ZSCAN12O43309 604 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 B4GAT1O43505 415 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 LIASO43766 372 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A9O60656 530 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 MTX2O75431 263 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 SRP72O76094 671 aaKnown RBP13.94□□□□□ -0.18
LIG1-218ENST00000599322 PRAMEF1O95521 474 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 ITGA2BP08514 1039 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A6P19224 532 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A1P22309 533 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A4P22310 534 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 CSTF2P33240 577 aaKnown RBP eCLIP13.94□□□□□ -0.18
LIG1-218ENST00000599322 ADRA1AP35348 466 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A3P35503 534 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A5P35504 534 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 EIF2S3P41091 472 aaKnown RBP13.94□□□□□ -0.18
LIG1-218ENST00000599322 NFATC2Q13469 925 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 SEPT6Q14141 434 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 SPARCL1Q14515 664 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 NR1D2Q14995 579 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 PLA2G4EQ3MJ16 856 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 AMZ2Q86W34 360 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 SFTPA2Q8IWL1 248 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 BEND7Q8N7W2 519 aaPredicted RBP13.94□□□□□ -0.18
LIG1-218ENST00000599322 DDHD1Q8NEL9 900 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 KCNE4Q8WWG9 221 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 CXorf40BQ96DE9 158 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 SLC46A1Q96NT5 459 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 TTC1Q99614 292 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A7Q9HAW7 530 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A10Q9HAW8 530 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 UGT1A8Q9HAW9 530 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 ARNT2Q9HBZ2 717 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 PAK5Q9P286 719 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 R3HDM2Q9Y2K5 976 aaKnown RBP13.94□□□□□ -0.18
LIG1-218ENST00000599322 ZKSCAN5Q9Y2L8 839 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 PPP2R2CQ9Y2T4 447 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 LOXL2Q9Y4K0 774 aa13.94□□□□□ -0.18
LIG1-218ENST00000599322 F8W8V4 182 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 PPM1DO15297 605 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 CEP104O60308 925 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 POP7O75817 140 aaKnown RBP13.93□□□□□ -0.18
LIG1-218ENST00000599322 AP2A1O95782 977 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 MAPK9P45984 424 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 EPHA4P54764 986 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 UCNP55089 124 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 TMPRSS15P98073 1019 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 CCDC173Q0VFZ6 552 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 SNX1Q13596 522 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 CCNG2Q16589 344 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 SKIDA1Q1XH10 827 aa13.93□□□□□ -0.18
LIG1-218ENST00000599322 GPR33Q49SQ1 333 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms