RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 ARID1BQ8NFD5 2236 aaPredicted RBP14.02□□□□□ -0.17
SHKBP1-217ENST00000598558 IGLV3-16A0A075B6K0 115 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 TRBV23OR9-2A0A075B6M9 112 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 A6NCN8 305 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 OR2AG2A6NM03 316 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 B4DGG1 531 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 MLNP12872 115 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 ZNF7P17097 686 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 SPINK2P20155 84 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 RPL21P46778 160 aaKnown RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 MAZP56270 477 aaKnown RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 ILF3Q12906 894 aaKnown RBP eCLIP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 TRADDQ15628 312 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 SMAD1Q15797 465 aaKnown RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 DHRS13Q6UX07 377 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 FAM83HQ6ZRV2 1179 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 SYDE1Q6ZW31 735 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 TAS2R42Q7RTR8 314 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 LDB1Q86U70 411 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 IGDCC3Q8IVU1 814 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 NAGSQ8N159 534 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 PPHLN1Q8NEY8 458 aaKnown RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 GSDMCQ9BYG8 508 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 IL22Q9GZX6 179 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 DPEP2Q9H4A9 486 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 KLC4Q9NSK0 619 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 ZDHHC3Q9NYG2 299 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 SCHIP1Q9P0W5 487 aaPredicted RBP14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 CRLS1Q9UJA2 301 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 PADI4Q9UM07 663 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 SOX13Q9UN79 622 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 SNX24Q9Y343 169 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 PRSS21Q9Y6M0 314 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 MYLKQ15746 1914 aa14.01□□□□□ -0.17
SHKBP1-217ENST00000598558 CPED1A4D0V7 1026 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 EME2A4GXA9 379 aaPredicted RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 KMOO15229 486 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 POP7O75817 140 aaKnown RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 ADRB1P08588 477 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 MSH3P20585 1137 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 ITGALP20701 1170 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 ACRV1P26436 265 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 ARCN1P48444 511 aaKnown RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 DAB2P98082 770 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 CACNG1Q06432 222 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 DHX34Q14147 1143 aaKnown RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 HLTFQ14527 1009 aaKnown RBP eCLIP14□□□□□ -0.17
SHKBP1-217ENST00000598558 NR0B2Q15466 257 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 GPR33Q49SQ1 333 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 HIBCHQ6NVY1 386 aaPredicted RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 EFL1Q7Z2Z2 1120 aaKnown RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 RAB44Q7Z6P3 723 aaPredicted RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 LRRTM4Q86VH4 590 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 LILRA3Q8N6C8 439 aaPredicted RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 CLDN19Q8N6F1 224 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 OR4L1Q8NH43 312 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 ZDHHC1Q8WTX9 485 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 ADAMTS14Q8WXS8 1223 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 RUNDC3BQ96NL0 473 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 WDR83Q9BRX9 315 aaKnown RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 PLAC1Q9HBJ0 212 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 MRM3Q9HC36 420 aaKnown RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 PRDM8Q9NQV8 689 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 IL1RAPL1Q9NZN1 696 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 DNAJC16Q9Y2G8 782 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 PCNX2A6NKB5 2137 aa14□□□□□ -0.17
SHKBP1-217ENST00000598558 TDRD6O60522 2096 aaKnown RBP14□□□□□ -0.17
SHKBP1-217ENST00000598558 COL5A1P20908 1838 aaPredicted RBP13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 PRAMEF33A0A0G2JMD5 474 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 SDR42E2A6NKP2 422 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 GPR89AB7ZAQ6 455 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 GOLGA8KD6RF30 607 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 GOLGA8TH3BQL2 631 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 HYAL3O43820 417 aaPredicted RBP13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 OR1I1O60431 355 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 SNX2O60749 519 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 SEC31AO94979 1220 aaKnown RBP13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 F7P08709 466 aaPredicted RBP13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 GPR89BP0CG08 455 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 BRAFP15056 766 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 PMLP29590 882 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 AKT1P31749 480 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 CLCNKAP51800 687 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 ITGA8P53708 1063 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 SARNPP82979 210 aaKnown RBP13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 FOXC1Q12948 553 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 LRP8Q14114 963 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 ANKRD20A4Q4UJ75 823 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 NLRP9Q7RTR0 991 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 ERMP1Q7Z2K6 904 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 TRAPPC5Q8IUR0 188 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 ARL14Q8N4G2 192 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 ARL10Q8N8L6 244 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 OR6P1Q8NGX9 317 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 IFI44Q8TCB0 444 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 SCG3Q8WXD2 468 aaKnown RBP13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 ULK4Q96C45 1275 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 COPS8Q99627 209 aa13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 XAB2Q9HCS7 855 aaKnown RBP13.99□□□□□ -0.17
SHKBP1-217ENST00000598558 APOBEC2Q9Y235 224 aaKnown RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms