RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 ZNF7P17097 686 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 ITGB6P18564 788 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 RPS3P23396 243 aaKnown RBP eCLIP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 LTBRP36941 435 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 HK3P52790 923 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 DLX2Q07687 328 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 PTRHD1Q6GMV3 140 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 ANKRD54Q6NXT1 300 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 GDPD4Q6W3E5 623 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 CYHR1Q6ZMK1 362 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 FBXO39Q8N4B4 442 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 CPSF7Q8N684 471 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 ZNF557Q8N988 423 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 SLC2A11Q9BYW1 496 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 CIPCQ9C0C6 399 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 MMADHCQ9H3L0 296 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 DUS2Q9NX74 493 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 CLEC1BQ9P126 229 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 CRLS1Q9UJA2 301 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 TSR3Q9UJK0 312 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 L3MBTL1Q9Y468 752 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 XIRP2A4UGR9 3374 aa16.87■□□□□ 0.29
SHKBP1-216ENST00000598201 C5orf42Q9H799 3197 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 WASH3PC4AMC7 463 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 SLC9A3R1O14745 358 aaPredicted RBP16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 PEX11AO75192 247 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 TBX10O75333 385 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 CISD3P0C7P0 127 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 PIK3R1P27986 724 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 EEF1DP29692 281 aaKnown RBP16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 MESP2Q0VG99 397 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 WASHC2DQ5SRD0 308 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 RAB44Q7Z6P3 723 aaPredicted RBP16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 RBFAQ8N0V3 343 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 WDR60Q8WVS4 1066 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 CMTM5Q96DZ9 223 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 FAR2Q96K12 515 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 SFXN1Q9H9B4 322 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 MEAF6Q9HAF1 191 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 B4GALT6Q9UBX8 382 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 CDH22Q9UJ99 828 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 WASF2Q9Y6W5 498 aa16.86■□□□□ 0.29
SHKBP1-216ENST00000598201 A0A1B0GTL3 188 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 MAGEC1O60732 1142 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 C1SP09871 688 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 AGTR2P50052 363 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 UGT3A2Q3SY77 523 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 DNAL1Q4LDG9 190 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 SYCE2Q6PIF2 218 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 NXPE1Q8N323 547 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 MAGEC3Q8TD91 643 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 OSCP1Q8WVF1 389 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 ZFYVE19Q96K21 471 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 THTPAQ9BU02 230 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 NKX1-2Q9UD57 310 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 SYCE1LA8MT33 242 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 AGAP14A8MT82 685 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 KLK8O60259 260 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 ADH5P11766 374 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 PRDX6P30041 224 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 PPARGP37231 505 aaPredicted RBP16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 RAP1GDS1P52306 607 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 FOXA1P55317 472 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 KPNB1Q14974 876 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 PPP1R3AQ16821 1122 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 FAM78AQ5JUQ0 283 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 UGT3A1Q6NUS8 523 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 PLPP6Q8IY26 295 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 CEP70Q8NHQ1 597 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 TRPC4APQ8TEL6 797 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 APOL5Q9BWW9 433 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 ABCG8Q9H221 673 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 MID1IP1Q9NPA3 183 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 GNPTGQ9UJJ9 305 aa16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 COPG1Q9Y678 874 aaKnown RBP16.85■□□□□ 0.29
SHKBP1-216ENST00000598201 PRUNE2Q8WUY3 3088 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 CHUKO15111 745 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 LEFTY1O75610 366 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 TM7SF2O76062 418 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 CTSLP07711 333 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 RECQLP46063 649 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 DGKGP49619 791 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 MNAT1P51948 309 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 INHBCP55103 352 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 SATB1Q01826 763 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 GPR33Q49SQ1 333 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 ATP13A5Q4VNC0 1218 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 ARSIQ5FYB1 569 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 RARS2Q5T160 578 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 GPSM1Q86YR5 675 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 SUGP1Q8IWZ8 645 aaKnown RBP16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 NPAS3Q8IXF0 933 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 ULK2Q8IYT8 1036 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 PELI3Q8N2H9 469 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 AFAP1L2Q8N4X5 818 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 ZNF366Q8N895 744 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 MAFAQ8NHW3 353 aaPredicted RBP16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 ESAMQ96AP7 390 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 PBXIP1Q96AQ6 731 aa16.84■□□□□ 0.29
SHKBP1-216ENST00000598201 HEPHQ9BQS7 1158 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms