RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	COLEC12	Q5KU26	742 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	C16orf46	Q6P387	395 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	TMEM26	Q6ZUK4	368 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	TMC3	Q7Z5M5	1100 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	LRRTM4	Q86VH4	590 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	RFX6	Q8HWS3	928 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	ZNF547	Q8IVP9	402 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	STARD8	Q92502	1023 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	RSC1A1	Q92681	617 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	RNF25	Q96BH1	459 aa	Predicted RBP	10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	C9orf72	Q96LT7	481 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	CATSPER2	Q96P56	530 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	ZPBP	Q9BS86	351 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	MAK16	Q9BXY0	300 aa	Known RBP	10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	ULBP3	Q9BZM4	244 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	SLC25A51	Q9H1U9	297 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	EPN3	Q9H201	632 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	DEF6	Q9H4E7	631 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	EPB41L1	Q9H4G0	881 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	UCK1	Q9HA47	277 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	GLOD4	Q9HC38	313 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	BPIFA1	Q9NP55	256 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	ZNF71	Q9NQZ8	489 aa	Predicted RBP	10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	SPTLC3	Q9NUV7	552 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	UBP1	Q9NZI7	540 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	NFKBIL1	Q9UBC1	381 aa	Predicted RBP	10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	TRIM10	Q9UDY6	481 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	LCMT1	Q9UIC8	334 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	RELN	P78509	3460 aa		10.37	□□□□□ -0.75
LSM4-205	ENST00000597776	PRR19	A6NJB7	356 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	GPR89A	B7ZAQ6	455 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776		F5H423	210 aa	Predicted RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	PPP1R12A	O14974	1030 aa	Predicted RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	KMO	O15229	486 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	CAPN5	O15484	640 aa	Predicted RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	GPR39	O43194	453 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	KIF1C	O43896	1103 aa	Known RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	AKR1B10	O60218	316 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	RASSF9	O75901	435 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	NDST3	O95803	873 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	C9	P02748	559 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	ANKRD34C	P0C6C1	535 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	GPR89B	P0CG08	455 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	AMD1	P17707	334 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	XRCC1	P18887	633 aa	Predicted RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	F8A1	P23610	371 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	LLGL1	Q15334	1064 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	ATP13A5	Q4VNC0	1218 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	PDPK2P	Q6A1A2	396 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	TRAPPC5	Q8IUR0	188 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	AVL9	Q8NBF6	648 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	GALNT6	Q8NCL4	622 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	OR8K1	Q8NGG5	319 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	C9orf43	Q8TAL5	461 aa	Predicted RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	ELMO2	Q96JJ3	720 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	OR6C1	Q96RD1	312 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	DNAJC7	Q99615	494 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	CHP1	Q99653	195 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	RAD18	Q9NS91	495 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	SAE1	Q9UBE0	346 aa	Predicted RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	TUBD1	Q9UJT1	453 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	10.36	□□□□□ -0.75	3e-6	■■■□□ 18.4
LSM4-205	ENST00000597776	RPS6KL1	Q9Y6S9	549 aa		10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	SPEN	Q96T58	3664 aa	Known RBP	10.36	□□□□□ -0.75
LSM4-205	ENST00000597776	FLNC	Q14315	2725 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776		A0A0A6YYK5	440 aa	Predicted RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	SSU72P8	A0A1W2PR75	194 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	VEGFD	O43915	354 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	CDK14	O94921	469 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	PECAM1	P16284	738 aa	Predicted RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	TCN2	P20062	427 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	PTPN3	P26045	913 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	CD68	P34810	354 aa	Predicted RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	CHRNA4	P43681	627 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	PPP1CA	P62136	330 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	GPR18	Q14330	331 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	PRKD1	Q15139	912 aa	Predicted RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	SLC14A2	Q15849	920 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	TEX44	Q53QW1	395 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	ABRAXAS1	Q6UWZ7	409 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	MFSD7	Q6UXD7	560 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	FAM92B	Q6ZTR7	304 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	C11orf96	Q7Z7L8	435 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	ESX1	Q8N693	406 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	GDAP1	Q8TB36	358 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	APOBEC4	Q8WW27	367 aa	Known RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	TIMM29	Q9BSF4	260 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	EFHD1	Q9BUP0	239 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	TRIT1	Q9H3H1	467 aa	Known RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	ZNF768	Q9H5H4	540 aa	Known RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	SLC40A1	Q9NP59	571 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	POT1	Q9NUX5	634 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	CROT	Q9UKG9	612 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	WDR37	Q9Y2I8	494 aa		10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	ZNF106	Q9H2Y7	1883 aa	Known RBP	10.35	□□□□□ -0.75
LSM4-205	ENST00000597776	KIAA0754	O94854	1291 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	NDUFA10	O95299	355 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	TPM3	P06753	285 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	FURIN	P09958	794 aa		10.34	□□□□□ -0.75
LSM4-205	ENST00000597776	ZFX	P17010	805 aa	Predicted RBP	10.34	□□□□□ -0.75

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