RNA–Protein interactions for RNA: ENST00000584760.1

SREBF1-223, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 2

Gene SREBF1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-223	ENST00000584760	RTP4	Q96DX8	246 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	LIN37	Q96GY3	246 aa	Predicted RBP	13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	PRR11	Q96HE9	360 aa	Predicted RBP	13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	TMEM121	Q9BTD3	319 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	FOXP3	Q9BZS1	431 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	LZTFL1	Q9NQ48	299 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	TBC1D29	Q9UFV1	150 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	SSUH2	Q9Y2M2	353 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	PKP3	Q9Y446	797 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	PCDHGA8	Q9Y5G5	932 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	ARL5A	Q9Y689	179 aa		13.14	□□□□□ -0.31
SREBF1-223	ENST00000584760	ATM	Q13315	3056 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	CCDC187	A0A096LP49	1063 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	GLYATL1P3	A0A0U1RQE8	302 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	PRR19	A6NJB7	356 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	RHPN2P1	A8MT19	583 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	PPM1D	O15297	605 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	B4GAT1	O43505	415 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	LIAS	O43766	372 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	VEGFD	O43915	354 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	METTL18	O95568	372 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	CA5A	P35218	305 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	GPR3	P46089	330 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	CLCNKA	P51800	687 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZFP36L1	Q07352	338 aa	Known RBP	13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	PTPRCAP	Q14761	206 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	TAF1A	Q15573	450 aa	Predicted RBP	13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	ARHGEF18	Q6ZSZ5	1173 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZNF547	Q8IVP9	402 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	DDHD1	Q8NEL9	900 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	CCDC97	Q96F63	343 aa	Predicted RBP	13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	ALS2CR12	Q96Q35	445 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	TBL1Y	Q9BQ87	522 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	ARNT2	Q9HBZ2	717 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	SMOX	Q9NWM0	555 aa		13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	FEZ2	Q9UHY8	353 aa	Predicted RBP	13.13	□□□□□ -0.31
SREBF1-223	ENST00000584760	PRAMEF1	O95521	474 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	CPNE6	O95741	557 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	F3	P13726	295 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	LPO	P22079	712 aa	Predicted RBP	13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	CSF2RB	P32927	897 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	ZNF140	P52738	457 aa	Predicted RBP	13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	INHBC	P55103	352 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	OR1D5	P58170	312 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	NFATC3	Q12968	1075 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	EIF3I	Q13347	325 aa	Known RBP	13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	ITGA9	Q13797	1035 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	SPARCL1	Q14515	664 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	RPS6KA1	Q15418	735 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	PARP6	Q2NL67	630 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	P3H1	Q32P28	736 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	PLA2G4E	Q3MJ16	856 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	MAP9	Q49MG5	647 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	C11orf96	Q7Z7L8	435 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	LRRTM4	Q86VH4	590 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	SLITRK4	Q8IW52	837 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	OR4K2	Q8NGD2	314 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	WDR36	Q8NI36	951 aa	Known RBP	13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	BRSK1	Q8TDC3	778 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	TMEM74	Q96NL1	305 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	NUDT22	Q9BRQ3	303 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	TIMM29	Q9BSF4	260 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	TRIM4	Q9C037	500 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	GRPEL1	Q9HAV7	217 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	RDH14	Q9HBH5	336 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	EPB41L5	Q9HCM4	733 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	SLC23A2	Q9UGH3	650 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	HEMK1	Q9Y5R4	338 aa	Predicted RBP	13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	HECTD1	Q9ULT8	2610 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	PIKFYVE	Q9Y2I7	2098 aa		13.12	□□□□□ -0.31
SREBF1-223	ENST00000584760	IGHV1OR21-1	A0A087WYE8	117 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	C2orf81	A6NN90	581 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	CDRT15L2	A8MXV6	281 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	TMX2-CTNND1	H3BSU7	103 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	KMO	O15229	486 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	STX7	O15400	261 aa	Known RBP	13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	LDB2	O43679	373 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A9	O60656	530 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	CDK14	O94921	469 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	AP2A1	O95782	977 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A6	P19224	532 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A1	P22309	533 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A4	P22310	534 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	ALDH4A1	P30038	563 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A3	P35503	534 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	UGT1A5	P35504	534 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	MLLT3	P42568	568 aa	Predicted RBP	13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	CSRP3	P50461	194 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	TMEM115	Q12893	351 aa	Predicted RBP	13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	BIRC2	Q13490	618 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	SIX1	Q15475	284 aa	Predicted RBP	13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	CLPP	Q16740	277 aa	Predicted RBP	13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	INSC	Q1MX18	579 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	LDLRAP1	Q5SW96	308 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	GPRC6A	Q5T6X5	926 aa		13.11	□□□□□ -0.31
SREBF1-223	ENST00000584760	IYD	Q6PHW0	289 aa		13.11	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms