RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 INPP4AQ96PE3 977 aaPredicted RBP4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 POLR3CQ9BUI4 534 aaPredicted RBP4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 C1QTNF1Q9BXJ1 281 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 GHITMQ9H3K2 345 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 FKRPQ9H9S5 495 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 TCF7L2Q9NQB0 619 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 DLGAP4Q9Y2H0 992 aa4.4□□□□□ -1.71
SMCHD1-204ENST00000581226 A0A1W2PP11 408 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 OR5K3A6NET4 321 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 BMPR1BO00238 502 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 EIF3DO15371 548 aaKnown RBP eCLIP4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 ZBTB43O43298 467 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 XPNPEP2O43895 674 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 TMCC2O75069 709 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 CRYAAP02489 173 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 ATP1A1P05023 1023 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 PSMB10P40306 273 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 MC1RQ01726 317 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 CREB5Q02930 508 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 AIMP2Q13155 320 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 IRF3Q14653 427 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 RARS2Q5T160 578 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 MZT2BQ6NZ67 158 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 KCTD8Q6ZWB6 473 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 PLEKHM3Q6ZWE6 761 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 METTL27Q8N6F8 245 aaPredicted RBP4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 SLC38A9Q8NBW4 561 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 OR52I2Q8NH67 350 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 PPP4R1Q8TF05 950 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 TMEM255BQ8WV15 326 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 FAM120BQ96EK7 910 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 LRRC1Q9BTT6 524 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 MAK16Q9BXY0 300 aaKnown RBP4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 RAD21L1Q9H4I0 556 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 B3GALT5Q9Y2C3 310 aa4.39□□□□□ -1.71
SMCHD1-204ENST00000581226 ZCWPW2A0A1B0GU75 182 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 CDRT15L2A8MXV6 281 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 TMEM178BH3BS89 294 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 CAPN9O14815 690 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 LMX1BO60663 402 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 IGLV2-11P01706 119 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 NR2F2P24468 414 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 HRH2P25021 359 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 HOXD13P35453 343 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 CD81P60033 236 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 PITX1P78337 314 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 RUNX1T1Q06455 604 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 RALBP1Q15311 655 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 MEP1AQ16819 746 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 ACCSLQ4AC99 568 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 DUSP28Q4G0W2 176 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 PDSS1Q5T2R2 415 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 TPRG1Q6ZUI0 275 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 EPHX4Q8IUS5 362 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 ARID3BQ8IVW6 561 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 RPAP2Q8IXW5 612 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 SCYL3Q8IZE3 742 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 GCSAMQ8N6F7 178 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 LMNTD1Q8N9Z9 388 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 DMBX1Q8NFW5 382 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 DNASE2BQ8WZ79 361 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 PHF21AQ96BD5 680 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 SAT2Q96F10 170 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 LINGO1Q96FE5 620 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 PAG1Q9NWQ8 432 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 MARCH4Q9P2E8 410 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 KLHL9Q9P2J3 617 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 POLG2Q9UHN1 485 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 VPS28Q9UK41 221 aa4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 TMEM184BQ9Y519 407 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 RSF1Q96T23 1441 aaPredicted RBP4.38□□□□□ -1.71
SMCHD1-204ENST00000581226 AGAP14A8MT82 685 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 ANKRD66B4E2M5 251 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 J3QR06 171 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 DVL1O14640 695 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 ZNF217O75362 1048 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 ARCN1P48444 511 aaKnown RBP4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 MMP14P50281 582 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 CTSCP53634 463 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 DVL1P1P54792 670 aaPredicted RBP4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 MFAP4P55083 255 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 MRPS5P82675 430 aaKnown RBP4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 PPP2R2BQ00005 443 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 SPOCK1Q08629 439 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 MVPQ14764 893 aaKnown RBP4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 RAB41Q5JT25 222 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 ZDHHC20Q5W0Z9 365 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 KRTAP5-11Q6L8G4 156 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 ZNF852Q6ZMS4 543 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 Q75L30 129 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 SZRD1Q7Z422 152 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 CUZD1Q86UP6 607 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 CEP97Q8IW35 865 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 C17orf53Q8N3J3 647 aaPredicted RBP4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 ZNF583Q96ND8 569 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 NODALQ96S42 347 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 GFI1Q99684 422 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 HRH4Q9H3N8 390 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 DNAJC18Q9H819 358 aa4.37□□□□□ -1.71
SMCHD1-204ENST00000581226 TBC1D29Q9UFV1 150 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms