RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 CLCNKAP51800 687 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 DSC2Q02487 901 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 LACTB2Q53H82 288 aaPredicted RBP13.21□□□□□ -0.29
TRAF4-214ENST00000580073 HENMT1Q5T8I9 393 aaKnown RBP13.21□□□□□ -0.29
TRAF4-214ENST00000580073 SLC9A4Q6AI14 798 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 IYDQ6PHW0 289 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 ZNF761Q86XN6 746 aaPredicted RBP13.21□□□□□ -0.29
TRAF4-214ENST00000580073 STARD8Q92502 1023 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 HDAC11Q96DB2 347 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 HES6Q96HZ4 224 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 CALR3Q96L12 384 aaKnown RBP13.21□□□□□ -0.29
TRAF4-214ENST00000580073 TSGA13Q96PP4 275 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 SRPK1Q96SB4 655 aaKnown RBP13.21□□□□□ -0.29
TRAF4-214ENST00000580073 ZSCAN5AQ9BUG6 496 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 TSGA10Q9BZW7 698 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 EPN3Q9H201 632 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 FAM83DQ9H4H8 585 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 RBM22Q9NW64 420 aaKnown RBP eCLIP13.21□□□□□ -0.295e-9■■■■□ 21.3
TRAF4-214ENST00000580073 DDX56Q9NY93 547 aaKnown RBP13.21□□□□□ -0.29
TRAF4-214ENST00000580073 CPNE7Q9UBL6 633 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 AMFRQ9UKV5 643 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 KCNK6Q9Y257 313 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 CHKBQ9Y259 395 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 PLEKHM1Q9Y4G2 1056 aa13.21□□□□□ -0.29
TRAF4-214ENST00000580073 MAST4O15021 2626 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 hCG_1818297A0A087WSY0 165 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 A8MU76 341 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 ZNF487B1APH4 448 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 GRID2O43424 1007 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 NUAK1O60285 661 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 SNX2O60749 519 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 PRKAR1AP10644 381 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 DCDC1P59894 354 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 INSCQ1MX18 579 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 ZFYVE27Q5T4F4 411 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 MEI1Q5TIA1 1274 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 B4GALNT4Q76KP1 1039 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 PEX26Q7Z412 305 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 PTRH1Q86Y79 214 aaKnown RBP13.2□□□□□ -0.3
TRAF4-214ENST00000580073 RBM12BQ8IXT5 1001 aaKnown RBP13.2□□□□□ -0.3
TRAF4-214ENST00000580073 TXLNBQ8N3L3 684 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 SEC14L1Q92503 715 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 STAMBPL1Q96FJ0 436 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 MLPHQ9BV36 600 aaPredicted RBP13.2□□□□□ -0.3
TRAF4-214ENST00000580073 ULBP3Q9BZM4 244 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 OSGEPL1Q9H4B0 414 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 POT1Q9NUX5 634 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 DTLQ9NZJ0 730 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 NFKBIL1Q9UBC1 381 aaPredicted RBP13.2□□□□□ -0.3
TRAF4-214ENST00000580073 SAE1Q9UBE0 346 aaPredicted RBP13.2□□□□□ -0.3
TRAF4-214ENST00000580073 TBC1D29Q9UFV1 150 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 NAV2Q8IVL1 2488 aa13.2□□□□□ -0.3
TRAF4-214ENST00000580073 TRBV23OR9-2A0A075B6M9 112 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 ANKRD66B4E2M5 251 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 MKRN2OSH3BPM6 223 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 ZRANB2O95218 330 aaKnown RBP eCLIP13.19□□□□□ -0.3
TRAF4-214ENST00000580073 CLDN7O95471 211 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 DLGAP3O95886 979 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 VIPP01282 170 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 MT-ND3P03897 115 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 ATP1A1P05023 1023 aaKnown RBP13.19□□□□□ -0.3
TRAF4-214ENST00000580073 PECAM1P16284 738 aaPredicted RBP13.19□□□□□ -0.3
TRAF4-214ENST00000580073 VCLP18206 1134 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 STAT5AP42229 794 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 IL11RAQ14626 422 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 KAZNQ674X7 775 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 VSIG1Q86XK7 387 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 RFX6Q8HWS3 928 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 CCDC13Q8IYE1 715 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 RCOR2Q8IZ40 523 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 C17orf53Q8N3J3 647 aaPredicted RBP13.19□□□□□ -0.3
TRAF4-214ENST00000580073 SPATA16Q9BXB7 569 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 HEMGNQ9BXL5 484 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 TLR10Q9BXR5 811 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 KLHL3Q9UH77 587 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 KCND3Q9UK17 655 aa13.19□□□□□ -0.3
TRAF4-214ENST00000580073 CCDC66A2RUB6 948 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 A6NCN8 305 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 KMOO15229 486 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 NRDCO43847 1150 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 UBXN7O94888 489 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 SLC25A14O95258 325 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-214ENST00000580073 HLA-DQB2P05538 268 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 AMD1P17707 334 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 XRCC1P18887 633 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-214ENST00000580073 TNNT3P45378 269 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-214ENST00000580073 RWDD2BP57060 319 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 DYNLT1P63172 113 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 FOXK1P85037 733 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 FOXM1Q08050 763 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 KLRB1Q12918 225 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 COLEC12Q5KU26 742 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 RFLNAQ6ZTI6 216 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 LRRTM4Q86VH4 590 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 ATCAYQ86WG3 371 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 SYCE1Q8N0S2 351 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.18□□□□□ -0.3
TRAF4-214ENST00000580073 CCNYQ8ND76 341 aa13.18□□□□□ -0.3
TRAF4-214ENST00000580073 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.18□□□□□ -0.3
TRAF4-214ENST00000580073 C9orf72Q96LT7 481 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms