RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 UVRAGQ9P2Y5 699 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 DNPEPQ9ULA0 475 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 SHOC2Q9UQ13 582 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 TTLL3Q9Y4R7 772 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 SPO11Q9Y5K1 396 aa6.63□□□□□ -1.35
VPS53-213ENST00000572334 MRPS18BQ9Y676 258 aaKnown RBP6.63□□□□□ -1.35
VPS53-213ENST00000572334 PRRC2CQ9Y520 2896 aaKnown RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 KIR2DS5A0A0G2JLQ3 304 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 A0A0G2JNG1 304 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SYCE3A1L190 88 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CLEC18AA5D8T8 446 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 ZNF891A8MT65 544 aaPredicted RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 ZNF487B1APH4 448 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 K7EM74 188 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 KIR2DS3K7RE56 304 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 ZW10O43264 779 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SNX2O60749 519 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 MTX2O75431 263 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 MT-CYBP00156 380 aaPredicted RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 KRT7P08729 469 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 FURINP09958 794 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 H2AFZP0C0S5 128 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SFTPCP11686 197 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 MX2P20592 715 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CD68P34810 354 aaPredicted RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 STAT5AP42229 794 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SSR1P43307 286 aaKnown RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 LEPRP48357 1165 aaKnown RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 GTF2A1P52655 376 aaPredicted RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 SH3BP2P78314 561 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 TLE1Q04724 770 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 ADCY2Q08462 1091 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 ABHD18Q0P651 414 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CDC20Q12834 499 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 KCNAB2Q13303 367 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 BIRC2Q13490 618 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 KIR2DS5Q14953 304 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 NOMO1Q15155 1222 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SLC18A3Q16572 532 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 TAZQ16635 292 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SKIDA1Q1XH10 827 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 COLEC12Q5KU26 742 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 ALS2CLQ60I27 953 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 ABRAXAS1Q6UWZ7 409 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CLEC18BQ6UXF7 455 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CEACAM20Q6UY09 585 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 TMEM26Q6ZUK4 368 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 H2AFVQ71UI9 128 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 KDELC2Q7Z4H8 507 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CCDC91Q7Z6B0 441 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SLC9B2Q86UD5 537 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 HOMEZQ8IX15 550 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CLEC18CQ8NCF0 446 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CCNYQ8ND76 341 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SPATA22Q8NHS9 363 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 RSC1A1Q92681 617 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 GLYATL1Q969I3 302 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 AHCYL2Q96HN2 611 aaKnown RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 C9orf72Q96LT7 481 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 TEFMQ96QE5 360 aaKnown RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 CHP1Q99653 195 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 ZFYVE1Q9HBF4 777 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 MAGEE1Q9HCI5 957 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 KLC4Q9NSK0 619 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 IFNKQ9P0W0 207 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 SEMA5BQ9P283 1151 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 CTTNBP2NLQ9P2B4 639 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 KLHL3Q9UH77 587 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 TUBD1Q9UJT1 453 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 WDR37Q9Y2I8 494 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 LUC7L2Q9Y383 392 aaKnown RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 ZNF711Q9Y462 761 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 HEMK1Q9Y5R4 338 aaPredicted RBP6.62□□□□□ -1.35
VPS53-213ENST00000572334 DOCK10Q96BY6 2186 aa6.62□□□□□ -1.35
VPS53-213ENST00000572334 LOC285095A0A1B0GVY8 99 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 OR5K4A6NMS3 321 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 OR52A4PA6NMU1 304 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 GAPDHSO14556 408 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 GPR39O43194 453 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 MTA2O94776 668 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 SLC25A14O95258 325 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 TIAF1O95411 115 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 TMEM253P0C7T8 217 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 PRKAR1AP10644 381 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 ZNF7P17097 686 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 TYRP1P17643 537 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CA4P22748 312 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 PTPN3P26045 913 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 MAP4P27816 1152 aaKnown RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 MAPK9P45984 424 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 CCR10P46092 362 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 PPP1CAP62136 330 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 WASHC5Q12768 1159 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 LAMB3Q13751 1172 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 MAP7Q14244 749 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 MESDQ14696 234 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 PRKD1Q15139 912 aaPredicted RBP6.61□□□□□ -1.35
VPS53-213ENST00000572334 SLC14A2Q15849 920 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 IGFBP7Q16270 282 aa6.61□□□□□ -1.35
VPS53-213ENST00000572334 PLA2G4EQ3MJ16 856 aa6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms