RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 CBARPQ8N350 705 aaPredicted RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 SPOCK2Q92563 424 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 RSC1A1Q92681 617 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 CLIP3Q96DZ5 547 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 ZNF514Q96K75 400 aaPredicted RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 FER1L6-AS2Q96M78 137 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 NLNQ9BYT8 704 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 AJAP1Q9UKB5 411 aaPredicted RBP10.89□□□□□ -0.67
VPS53-207ENST00000570510 FZD10Q9ULW2 581 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 SIK3Q9Y2K2 1263 aa10.89□□□□□ -0.67
VPS53-207ENST00000570510 CSMD2Q7Z408 3487 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 DIDO1Q9BTC0 2240 aaKnown RBP10.88□□□□□ -0.67
VPS53-207ENST00000570510 PDZD2O15018 2839 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 NF1P21359 2839 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 F8VZ95 297 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 PES1O00541 588 aaKnown RBP10.88□□□□□ -0.67
VPS53-207ENST00000570510 PEX12O00623 359 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 RAB40ALP0C0E4 278 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 EBLN1P0CF75 366 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 ZNF30P17039 623 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 TNFAIP3P21580 790 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 ART3Q13508 389 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 PTPRRQ15256 657 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 LLGL1Q15334 1064 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 ANO6Q4KMQ2 910 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 FIGNQ5HY92 759 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 TMTC4Q5T4D3 741 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 RFLNAQ6ZTI6 216 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 NOP9Q86U38 636 aaKnown RBP10.88□□□□□ -0.67
VPS53-207ENST00000570510 NLRP8Q86W28 1048 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 RBM12BQ8IXT5 1001 aaKnown RBP10.88□□□□□ -0.67
VPS53-207ENST00000570510 NEK11Q8NG66 645 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 SLC30A5Q8TAD4 765 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 CPT1BQ92523 772 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 HDAC11Q96DB2 347 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 COX14Q96I36 57 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 NUDCD1Q96RS6 583 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 AGAP2Q99490 1192 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 GANQ9H2C0 597 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 HSD3B7Q9H2F3 369 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 FANCEQ9HB96 536 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 NOD2Q9HC29 1040 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 KCND1Q9NSA2 647 aa10.88□□□□□ -0.67
VPS53-207ENST00000570510 SUCOQ9UBS9 1254 aaKnown RBP10.88□□□□□ -0.67
VPS53-207ENST00000570510 KLF2Q9Y5W3 355 aaPredicted RBP10.88□□□□□ -0.67
VPS53-207ENST00000570510 HIVEP1P15822 2718 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 CROCCQ5TZA2 2017 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 IGHV5-51A0A0C4DH38 117 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 A0A0U1RQS6 177 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 C9J4A7 227 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 MEN1O00255 615 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 ABCB7O75027 752 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 PGLSO95336 258 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 NADKO95544 446 aaPredicted RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 IGHEP01854 428 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 EDN3P14138 238 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 MMP8P22894 467 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 OTX2P32243 289 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 SOX5P35711 763 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 SLC19A1P41440 591 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 NSFP46459 744 aaKnown RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 GSCP56915 257 aaPredicted RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 JAM2P57087 298 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 TUBB4BP68371 445 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 HSD11B2P80365 405 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 PTSQ03393 145 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 UBXN1Q04323 297 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 ITKQ08881 620 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 SLC10A7Q0GE19 358 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 TRAF2Q12933 501 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 GPS2Q13227 327 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 TUBB2AQ13885 445 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 IQCB1Q15051 598 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 FAM69BQ5VUD6 431 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 WDR59Q6PJI9 974 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 ARHGAP36Q6ZRI8 547 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 APTXQ7Z2E3 356 aaKnown RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 KCNMB4Q86W47 210 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 GALNT16Q8N428 558 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 AOPEPQ8N6M6 819 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 OR8K5Q8NH50 307 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 ADAMTS17Q8TE56 1095 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 SLC41A2Q96JW4 573 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 PCMTD1Q96MG8 357 aaPredicted RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 ZNF599Q96NL3 588 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 IP6K3Q96PC2 410 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 MCCC1Q96RQ3 725 aaPredicted RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 TUBB2BQ9BVA1 445 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 CARD9Q9H257 536 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 VPS16Q9H269 839 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 DHX35Q9H5Z1 703 aaKnown RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 POT1Q9NUX5 634 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 TAB2Q9NYJ8 693 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 ADAM22Q9P0K1 906 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 EPHA6Q9UF33 1036 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 DNPEPQ9ULA0 475 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 DNAJC16Q9Y2G8 782 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 PADI2Q9Y2J8 665 aa10.87□□□□□ -0.67
VPS53-207ENST00000570510 PCYT1BQ9Y5K3 369 aaPredicted RBP10.87□□□□□ -0.67
VPS53-207ENST00000570510 A0A1B0GTH6 734 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms