RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ARL4DP49703 201 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 DCAF10Q5QP82 559 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 FCRL6Q6DN72 434 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 RPTNQ6XPR3 784 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 MRGPREQ86SM8 312 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 D2HGDHQ8N465 521 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 PPP4R1Q8TF05 950 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 C14orf79Q96F83 325 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 RIOK2Q9BVS4 552 aaKnown RBP17.72■□□□□ 0.43
CLK3-227ENST00000570296 KCND1Q9NSA2 647 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 KIAA1468Q9P260 1216 aa17.72■□□□□ 0.43
CLK3-227ENST00000570296 AJAP1Q9UKB5 411 aaPredicted RBP17.72■□□□□ 0.43
CLK3-227ENST00000570296 GRID2O43424 1007 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 CAPN1P07384 714 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 DRD2P14416 443 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 CD44P16070 742 aaKnown RBP17.71■□□□□ 0.43
CLK3-227ENST00000570296 HSPA9P38646 679 aaKnown RBP17.71■□□□□ 0.43
CLK3-227ENST00000570296 SOX8P57073 446 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 NOMO3P69849 1222 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 IL10RBQ08334 325 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 GPR18Q14330 331 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 PTPRRQ15256 657 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 EXOC3L4Q17RC7 722 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 LRRC66Q68CR7 880 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 MTFR2Q6P444 385 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 FAM198BQ6UWH4 519 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 JOSD2Q8TAC2 188 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 CPA5Q8WXQ8 436 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 CPT1BQ92523 772 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 SMARCE1Q969G3 411 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 TMUB1Q9BVT8 246 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 CARD9Q9H257 536 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 OSGEPL1Q9H4B0 414 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 SLC40A1Q9NP59 571 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 KLC4Q9NSK0 619 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 DNAJC12Q9UKB3 198 aa17.71■□□□□ 0.43
CLK3-227ENST00000570296 CNOT6Q9ULM6 557 aaKnown RBP17.71■□□□□ 0.43
CLK3-227ENST00000570296 TTC24A2A3L6 582 aaPredicted RBP17.7■□□□□ 0.42
CLK3-227ENST00000570296 GTPBP10A4D1E9 387 aaKnown RBP17.7■□□□□ 0.42
CLK3-227ENST00000570296 NUAK1O60285 661 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 PGLSO95336 258 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 CD99P14209 185 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 ZNF30P17039 623 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 PON1P27169 355 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 RFC1P35251 1148 aaPredicted RBP17.7■□□□□ 0.42
CLK3-227ENST00000570296 RORAP35398 523 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 AIF1P55008 147 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 PPP1CAP62136 330 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 HSD11B2P80365 405 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 PTSQ03393 145 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 TRAF2Q12933 501 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 NCF4Q15080 339 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 NAA35Q5VZE5 725 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 B3GNTL1Q67FW5 361 aaPredicted RBP17.7■□□□□ 0.42
CLK3-227ENST00000570296 KLHL10Q6JEL2 608 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 RAVER1Q8IY67 606 aaKnown RBP17.7■□□□□ 0.42
CLK3-227ENST00000570296 NELFBQ8WX92 580 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 ZNF501Q96CX3 271 aaPredicted RBP17.7■□□□□ 0.42
CLK3-227ENST00000570296 CCDC120Q96HB5 630 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 NUDCD1Q96RS6 583 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 CD180Q99467 661 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 ZBTB20Q9HC78 741 aaPredicted RBP17.7■□□□□ 0.42
CLK3-227ENST00000570296 PADI2Q9Y2J8 665 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 SIK3Q9Y2K2 1263 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 DOCK10Q96BY6 2186 aa17.7■□□□□ 0.42
CLK3-227ENST00000570296 A0A0U1RQS6 177 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 HADHAP40939 763 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 TPI1P60174 286 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 KRT85P78386 507 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 OTUD4Q01804 1114 aaKnown RBP17.69■□□□□ 0.42
CLK3-227ENST00000570296 LBRQ14739 615 aaKnown RBP17.69■□□□□ 0.42
CLK3-227ENST00000570296 ARMC12Q5T9G4 340 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 TAF3Q5VWG9 929 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 CERS6Q6ZMG9 384 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 NDUFAF2Q8N183 169 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 ZNF599Q96NL3 588 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 FZD10Q9ULW2 581 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 CSAG2Q9Y5P2 127 aa17.69■□□□□ 0.42
CLK3-227ENST00000570296 TLCD2A6NGC4 264 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 JRKO75564 520 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 MTA2O94776 668 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 CTPS1P17812 591 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 OTX2P32243 289 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 STC1P52823 247 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 GPR19Q15760 415 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 RALGPS1Q5JS13 557 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 KLHL35Q6PF15 583 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 FAM180AQ6UWF9 173 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 TRIM72Q6ZMU5 477 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 SPOCD1Q6ZMY3 1216 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 SYTL1Q8IYJ3 562 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 PIH1D2Q8WWB5 315 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 SNX21Q969T3 373 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 CLIP3Q96DZ5 547 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 MAP3K3Q99759 626 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 DHRS4Q9BTZ2 278 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 NOD2Q9HC29 1040 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 MCCC2Q9HCC0 563 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 SIX2Q9NPC8 291 aa17.68■□□□□ 0.42
CLK3-227ENST00000570296 OLAHQ9NV23 265 aa17.68■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms