RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ABRAQ8N0Z2 381 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 FATE1Q969F0 183 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 ACTR6Q9GZN1 396 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 B3GNT2Q9NY97 397 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 PPP2R3BQ9Y5P8 575 aa10.76□□□□□ -0.69
CLK3-226ENST00000569406 FAM149AA5PLN7 773 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ADM5C9JUS6 153 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 CDK1P06493 297 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 APOA4P06727 396 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 DHRS4L1P0CG22 281 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ELK4P28324 431 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 LIG4P49917 911 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 MLLT1Q03111 559 aaPredicted RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 PPIL2Q13356 520 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ART3Q13508 389 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 CYP27C1Q4G0S4 372 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PDSS1Q5T2R2 415 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 CYB5R2Q6BCY4 276 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 COMMD7Q86VX2 200 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PHF13Q86YI8 300 aaPredicted RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 TMEM192Q8IY95 271 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 SFRP1Q8N474 314 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 GLIS1Q8NBF1 620 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 OR52N1Q8NH53 320 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 NANPQ8TBE9 248 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 UBASH3BQ8TF42 649 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PAWRQ96IZ0 340 aaKnown RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 LENG8Q96PV6 779 aaPredicted RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 CGRRF1Q99675 332 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 GPR20Q99678 358 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 SPATC1LQ9H0A9 340 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PCDHAC1Q9H158 963 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 CYP3A43Q9HB55 503 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ZNF275Q9NSD4 429 aaPredicted RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 TRIP11Q15643 1979 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 SGCEO43556 437 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 UGT2B11O75310 529 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PLATP00750 562 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 EPOP01588 193 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 HOXC6P09630 235 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PSMA4P25789 261 aaKnown RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 HTR1BP28222 390 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 POU3F4P49335 361 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 MAP2K6P52564 334 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 CAPZA1P52907 286 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PIGFQ07326 219 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PTPRRQ15256 657 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ZNF792Q3KQV3 632 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ATP13A4Q4VNC1 1196 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 MPP7Q5T2T1 576 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 CES4AQ5XG92 561 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 FCRLBQ6BAA4 426 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 MAMDC4Q6UXC1 1216 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 MOB2Q70IA6 237 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ARFGAP1Q8N6T3 406 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ATG16L2Q8NAA4 619 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 OR4D10Q8NGI6 311 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 TFAP2BQ92481 460 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 SEPT8Q92599 483 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 USP7Q93009 1102 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 MINDY3Q9H8M7 445 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 DNAJC11Q9NVH1 559 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 CYTH4Q9UIA0 394 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 DERAQ9Y315 318 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 POP4O95707 220 aaKnown RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 MEOX2P50222 304 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 GRB7Q14451 532 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 POU4F3Q15319 338 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ZNF181Q2M3W8 571 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 POMZP3Q6PJE2 187 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 TMEM270Q6UE05 265 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ZNF517Q6ZMY9 492 aaPredicted RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 DPP9Q86TI2 863 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 NT5DC4Q86YG4 428 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 TRPV3Q8NET8 790 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 MCFD2Q8NI22 146 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 RNF170Q96K19 258 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 ZNF285Q96NJ3 590 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 TWNKQ96RR1 684 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 GTPBP2Q9BX10 602 aaKnown RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 RBPJLQ9UBG7 517 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 PRPF19Q9UMS4 504 aaKnown RBP10.75□□□□□ -0.69
CLK3-226ENST00000569406 PLCL2Q9UPR0 1127 aa10.75□□□□□ -0.69
CLK3-226ENST00000569406 FAM92AA1XBS5 289 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 INHBAP08476 426 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 JUPP14923 745 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 CD1EP15812 388 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 HLCSP50747 726 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 SLAMF1Q13291 335 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 KRR1Q13601 381 aaKnown RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 ZNF773Q6PK81 442 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 SYDE1Q6ZW31 735 aaPredicted RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 NLGN4XQ8N0W4 816 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 SVOPQ8N4V2 548 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 FAM71DQ8N9W8 422 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 CMTM3Q96MX0 182 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 OR52B2Q96RD2 323 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 ACO2Q99798 780 aaKnown RBP10.74□□□□□ -0.69
CLK3-226ENST00000569406 RTKNQ9BST9 563 aa10.74□□□□□ -0.69
CLK3-226ENST00000569406 RSAD1Q9HA92 442 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms