RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 IZUMO3Q5VZ72 239 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 NLRP9Q7RTR0 991 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 MAATS1Q7Z4T9 603 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 GKN2Q86XP6 184 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 GALNT13Q8IUC8 556 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 ZNF398Q8TD17 642 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 TBATAQ96M53 351 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 TTC25Q96NG3 672 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 VPS35Q96QK1 796 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 RANBP9Q96S59 729 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 TRIM51Q9BSJ1 452 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 LRRC61Q9BV99 259 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 IL22Q9GZX6 179 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 ARFGAP3Q9NP61 516 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 NLE1Q9NVX2 485 aaPredicted RBP17.06■□□□□ 0.32
CLN3-217ENST00000565354 UCKL1Q9NWZ5 548 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 CRLS1Q9UJA2 301 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 SLC17A4Q9Y2C5 497 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 TCAF1Q9Y4C2 921 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 DGKBQ9Y6T7 804 aa17.06■□□□□ 0.32
CLN3-217ENST00000565354 PTPN13Q12923 2485 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 CCL22O00626 93 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A9O60656 530 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 TMEM63AO94886 807 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 MT-CO3P00414 261 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 IVLP07476 585 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A6P19224 532 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A1P22309 533 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A4P22310 534 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 MGAT1P26572 445 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 AKT1P31749 480 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 MC4RP32245 332 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A3P35503 534 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A5P35504 534 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 MAGEA6P43360 314 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 TUBB2AQ13885 445 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 CASC4Q6P4E1 433 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 TAF8Q7Z7C8 310 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 DTX3LQ8TDB6 740 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 SCG3Q8WXD2 468 aaKnown RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 NAF1Q96HR8 494 aaKnown RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 ZNF578Q96N58 590 aaPredicted RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 C19orf43Q9BQ61 176 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 TUBB2BQ9BVA1 445 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 DUSP23Q9BVJ7 150 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 TRIM31Q9BZY9 425 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 ZCCHC2Q9C0B9 1178 aaKnown RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 OR2AG1Q9H205 316 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 CAAP1Q9H8G2 361 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A7Q9HAW7 530 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A10Q9HAW8 530 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 UGT1A8Q9HAW9 530 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 TRIM39Q9HCM9 518 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 XAB2Q9HCS7 855 aaKnown RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 SAMD15Q9P1V8 674 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 VPS18Q9P253 973 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 ZNHIT2Q9UHR6 403 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 CNOT6Q9ULM6 557 aaKnown RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 PNMA8BQ9ULN7 279 aaPredicted RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 OAS3Q9Y6K5 1087 aaKnown RBP17.05■□□□□ 0.32
CLN3-217ENST00000565354 CSNK1G3Q9Y6M4 447 aa17.05■□□□□ 0.32
CLN3-217ENST00000565354 FAM187AA6NFU0 413 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 MTX2O75431 263 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 MSH3P20585 1137 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 PRAMEP78395 509 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 ILF3Q12906 894 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLN3-217ENST00000565354 DEFB133Q30KQ1 61 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 LDLRAP1Q5SW96 308 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 ZNF648Q5T619 568 aaPredicted RBP17.04■□□□□ 0.32
CLN3-217ENST00000565354 TSTD2Q5T7W7 516 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 RNASEH2BQ5TBB1 312 aaKnown RBP17.04■□□□□ 0.32
CLN3-217ENST00000565354 TAS2R42Q7RTR8 314 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 SLC25A45Q8N413 288 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 MCUQ8NE86 351 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLN3-217ENST00000565354 ULK4Q96C45 1275 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 CDKN2AIPNLQ96HQ2 116 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 OR2M4Q96R27 311 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 GSDMCQ9BYG8 508 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 CLMPQ9H6B4 373 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 RMI1Q9H9A7 625 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 CPNE5Q9HCH3 593 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 SYBUQ9NX95 663 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 NLGN3Q9NZ94 848 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 PCDHB1Q9Y5F3 818 aa17.04■□□□□ 0.32
CLN3-217ENST00000565354 MROH6A6NGR9 719 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 EFCAB8A8MWE9 144 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 TRIM38O00635 465 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 NDC80O14777 642 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 GPR39O43194 453 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 SIGLEC6O43699 453 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 VEGFDO43915 354 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 CDK14O94921 469 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 MLNP12872 115 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 CRADDP78560 199 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 DAB2P98082 770 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 NFATC2Q13469 925 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 ARHGAP40Q5TG30 622 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 KCTD16Q68DU8 428 aa17.03■□□□□ 0.32
CLN3-217ENST00000565354 SNX20Q7Z614 316 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms