RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 HOMER3Q9NSC5 361 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 TRNAU1APQ9NX07 287 aaKnown RBP9.1□□□□□ -0.95
VPS35-206ENST00000565228 KCTD5Q9NXV2 234 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 VPS18Q9P253 973 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 FTSJ1Q9UET6 329 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 TBC1D29Q9UFV1 150 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 WDR37Q9Y2I8 494 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 TCAF1Q9Y4C2 921 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 GPSM3Q9Y4H4 160 aa9.1□□□□□ -0.95
VPS35-206ENST00000565228 IGLV3-16A0A075B6K0 115 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 A0A1W2PQM1 296 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 EME2A4GXA9 379 aaPredicted RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 OR2AG2A6NM03 316 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 B4DGG1 531 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 BHMG1C9JSJ3 638 aaPredicted RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 GOLGA8KD6RF30 607 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 H3BM21 787 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 GOLGA8TH3BQL2 631 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 DNALI1O14645 258 aaPredicted RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 PPM1DO15297 605 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 RAD51CO43502 376 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 OR1I1O60431 355 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 ECEL1O95672 775 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 CRTAMO95727 393 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 CTSEP14091 401 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 SDHBP21912 280 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 ADRA1DP25100 572 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 CASQ1P31415 396 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 RPL21P46778 160 aaKnown RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 INSM1Q01101 510 aaPredicted RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 FOXC1Q12948 553 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 ST3GAL2Q16842 350 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 CCDC157Q569K6 752 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 ZNF789Q5FWF6 425 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 PDPK2PQ6A1A2 396 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 NAPRTQ6XQN6 538 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 PPP1R21Q6ZMI0 780 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 CHST15Q7LFX5 561 aaPredicted RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 TAF8Q7Z7C8 310 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 NXPE1Q8N323 547 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 FSTL5Q8N475 847 aaPredicted RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 DNAAF3Q8N9W5 541 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 FAM46DQ8NEK8 389 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 LKAAEAR1Q8TD35 194 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 STYXQ8WUJ0 223 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 ADAMTS14Q8WXS8 1223 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 KRT12Q99456 494 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 FERMT1Q9BQL6 677 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 KIFC1Q9BW19 673 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 SLC32A1Q9H598 525 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 PRDM8Q9NQV8 689 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 ZNHIT2Q9UHR6 403 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 FEZ2Q9UHY8 353 aaPredicted RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 RALYQ9UKM9 306 aaKnown RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 GPR34Q9UPC5 381 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 PKP3Q9Y446 797 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 RNF215Q9Y6U7 377 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 GCN1Q92616 2671 aaKnown RBP9.09□□□□□ -0.95
VPS35-206ENST00000565228 FREM2Q5SZK8 3169 aa9.09□□□□□ -0.95
VPS35-206ENST00000565228 ZCWPW2A0A1B0GU75 182 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 C2orf81A6NN90 581 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 E7EVH7 732 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 B4GAT1O43505 415 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 ZNF189O75820 626 aaPredicted RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 CDK14O94921 469 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 CAPNS1P04632 268 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 ANXA6P08133 673 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 KELP23276 732 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 ACRV1P26436 265 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 ACTR1BP42025 376 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 LMAN1P49257 510 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 ACTR1AP61163 376 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 CAMK2BQ13554 666 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 NFE2L1Q14494 772 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 CLCA4Q14CN2 919 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 PCID2Q5JVF3 399 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 UBAP2Q5T6F2 1119 aaKnown RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 CDCP2Q5VXM1 449 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 IZUMO3Q5VZ72 239 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 HIBCHQ6NVY1 386 aaPredicted RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 ZCCHC8Q6NZY4 707 aaKnown RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 TMEM220Q6QAJ8 160 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 EFL1Q7Z2Z2 1120 aaKnown RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 SNX20Q7Z614 316 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 LINC00523Q86TU6 105 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 SERPINA9Q86WD7 417 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 ZNF761Q86XN6 746 aaPredicted RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 PHYKPLQ8IUZ5 450 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 ARL14Q8N4G2 192 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 CLDN19Q8N6F1 224 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 MCUQ8NE86 351 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 IFI44Q8TCB0 444 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 SLC37A2Q8TED4 501 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 CCDC74AQ96AQ1 378 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 PPP1R2P1Q96PQ5 205 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 SRPK1Q96SB4 655 aaKnown RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 NAP1L3Q99457 506 aaPredicted RBP9.08□□□□□ -0.96
VPS35-206ENST00000565228 CDC6Q99741 560 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 SCNM1Q9BWG6 230 aa9.08□□□□□ -0.96
VPS35-206ENST00000565228 CDH19Q9H159 772 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms