RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 BPIP17213 487 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 CASP14P31944 242 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 DLSTP36957 453 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 DRG2P55039 364 aaKnown RBP16.6■□□□□ 0.25
CLN3-211ENST00000564091 DCDC1P59894 354 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 TPM4P67936 248 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 FOXK1P85037 733 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 MC1RQ01726 317 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 CDK18Q07002 472 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 MESDQ14696 234 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 KHDC1Q4VXA5 237 aaKnown RBP16.6■□□□□ 0.25
CLN3-211ENST00000564091 C6orf15Q6UXA7 325 aaPredicted RBP16.6■□□□□ 0.25
CLN3-211ENST00000564091 NPNTQ6UXI9 565 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 NT5DC3Q86UY8 548 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 LRRTM4Q86VH4 590 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 ZNF547Q8IVP9 402 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 GALNT6Q8NCL4 622 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 CTNNBL1Q8WYA6 563 aaPredicted RBP16.6■□□□□ 0.25
CLN3-211ENST00000564091 OR6C1Q96RD1 312 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 MAGEE1Q9HCI5 957 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 CROTQ9UKG9 612 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 TMPRSS11EQ9UL52 423 aa16.6■□□□□ 0.25
CLN3-211ENST00000564091 PRR19A6NJB7 356 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 OR52A4PA6NMU1 304 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 GPR89AB7ZAQ6 455 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 AURKAO14965 403 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 KMOO15229 486 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 RASSF9O75901 435 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 KIAA0754O94854 1291 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 CDK14O94921 469 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 MT-CYBP00156 380 aaPredicted RBP16.59■□□□□ 0.25
CLN3-211ENST00000564091 GPR89BP0CG08 455 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 MAP7Q14244 749 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 ERV3-1Q14264 604 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 SPATA22Q8NHS9 363 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.59■□□□□ 0.25
CLN3-211ENST00000564091 RSC1A1Q92681 617 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 TIMM29Q9BSF4 260 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 MAK16Q9BXY0 300 aaKnown RBP16.59■□□□□ 0.25
CLN3-211ENST00000564091 SLC25A51Q9H1U9 297 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 BPIFA1Q9NP55 256 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 SPO11Q9Y5K1 396 aa16.59■□□□□ 0.25
CLN3-211ENST00000564091 SYCE3A1L190 88 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 C3orf70A6NLC5 250 aaPredicted RBP16.58■□□□□ 0.24
CLN3-211ENST00000564091 K7EM74 188 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 APOL1O14791 398 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 KATNA1O75449 491 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 FURINP09958 794 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 NR1D1P20393 614 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 SEPT6Q14141 434 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 UBAP2LQ14157 1087 aaKnown RBP16.58■□□□□ 0.24
CLN3-211ENST00000564091 PDK1Q15118 436 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 CRTC2Q53ET0 693 aaPredicted RBP16.58■□□□□ 0.24
CLN3-211ENST00000564091 LACTB2Q53H82 288 aaPredicted RBP16.58■□□□□ 0.24
CLN3-211ENST00000564091 CACHD1Q5VU97 1274 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 PDPK2PQ6A1A2 396 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 SLC9A4Q6AI14 798 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 ABRAXAS1Q6UWZ7 409 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 FAM92BQ6ZTR7 304 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 RASGRP3Q8IV61 690 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 TADA1Q96BN2 335 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 IQCDQ96DY2 449 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 ZNF768Q9H5H4 540 aaKnown RBP16.58■□□□□ 0.24
CLN3-211ENST00000564091 RAD18Q9NS91 495 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 UBP1Q9NZI7 540 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 IFNKQ9P0W0 207 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 ANKMY1Q9P2S6 941 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 NFKBIL1Q9UBC1 381 aaPredicted RBP16.58■□□□□ 0.24
CLN3-211ENST00000564091 WDR37Q9Y2I8 494 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 KCNMB2Q9Y691 235 aa16.58■□□□□ 0.24
CLN3-211ENST00000564091 TOX3O15405 576 aaPredicted RBP16.57■□□□□ 0.24
CLN3-211ENST00000564091 VEGFDO43915 354 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 PMPCBO75439 489 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 NDUFA10O95299 355 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 IDSP22304 550 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 CAPZBP47756 277 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 DYNLT1P63172 113 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 GPR18Q14330 331 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 SLC18A3Q16572 532 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 ATP13A5Q4VNC0 1218 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 IRGCQ6NXR0 463 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 C11orf96Q7Z7L8 435 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 TMEM135Q86UB9 458 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 RFX6Q8HWS3 928 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 STAMBPL1Q96FJ0 436 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 OLFM3Q96PB7 478 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 GLOD4Q9HC38 313 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 SLC40A1Q9NP59 571 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 POT1Q9NUX5 634 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 LCMT1Q9UIC8 334 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 LNPEPQ9UIQ6 1025 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 PLAAQ9Y263 795 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 TP53TG5Q9Y2B4 290 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 PCDHB3Q9Y5E6 796 aa16.57■□□□□ 0.24
CLN3-211ENST00000564091 ZFC3H1O60293 1989 aaKnown RBP16.57■□□□□ 0.24
CLN3-211ENST00000564091 DOPEY2Q9Y3R5 2298 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 SPAG6O75602 509 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 NDST3O95803 873 aa16.56■□□□□ 0.24
CLN3-211ENST00000564091 HNRNPH3P31942 346 aaKnown RBP16.56■□□□□ 0.24
CLN3-211ENST00000564091 PPP1CAP62136 330 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms