RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 UGT1A8Q9HAW9 530 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 ETNK1Q9HBU6 452 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 RAB6BQ9NRW1 208 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 IGSF5Q9NSI5 407 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 KLC4Q9NSK0 619 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 TBC1D29Q9UFV1 150 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 FKBPLQ9UIM3 349 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 RABGEF1Q9UJ41 708 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 PCDHB1Q9Y5F3 818 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 ENTPD2Q9Y5L3 495 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 SLC30A1Q9Y6M5 507 aa13.21□□□□□ -0.29
CLK3-213ENST00000563842 CCDC187A0A096LP49 1063 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 A0A1W2PQM1 296 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 CFAP99D6REC4 459 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 AP3B1O00203 1094 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 LDB2O43679 373 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SNX2O60749 519 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SUN1O94901 812 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 CPNE6O95741 557 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 IDSP22304 550 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 ALDH4A1P30038 563 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 MLLT3P42568 568 aaPredicted RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 ZNF140P52738 457 aaPredicted RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 INHBCP55103 352 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 GPLD1P80108 840 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 B4GALNT1Q00973 533 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 HHEXQ03014 270 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 EIF3IQ13347 325 aaKnown RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 NFATC2Q13469 925 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SEMA5AQ13591 1074 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SKIDA1Q1XH10 827 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 GPR33Q49SQ1 333 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 GPRC6AQ5T6X5 926 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SNX20Q7Z614 316 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SFTPA2Q8IWL1 248 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 TAB3Q8N5C8 712 aaPredicted RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 OR13C4Q8NGS5 318 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 WDR36Q8NI36 951 aaKnown RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 SLC37A2Q8TED4 501 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 PATE1Q8WXA2 126 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 TMEM159Q96B96 161 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 DCUN1D1Q96GG9 259 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 LIN37Q96GY3 246 aaPredicted RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 PDLIM2Q96JY6 352 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SLC38A3Q99624 504 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 SARS2Q9NP81 518 aaKnown RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 NLE1Q9NVX2 485 aaPredicted RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 CRLS1Q9UJA2 301 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 TMPRSS11EQ9UL52 423 aa13.2□□□□□ -0.3
CLK3-213ENST00000563842 PCYT1BQ9Y5K3 369 aaPredicted RBP13.2□□□□□ -0.3
CLK3-213ENST00000563842 HEATR9A2RTY3 570 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 SRRM3A6NNA2 597 aaPredicted RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 AGAP14A8MT82 685 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 H7C0S8 307 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 GAPDHSO14556 408 aaPredicted RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 PPM1DO15297 605 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 DXOO77932 396 aaKnown RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 APRTP07741 180 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 TPH1P17752 444 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 RBMS1P29558 406 aaKnown RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 CCKBRP32239 447 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 GABREP78334 506 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 TMPRSS15P98073 1019 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 XIAPP98170 497 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 SQSTM1Q13501 440 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 SEPT6Q14141 434 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 PTPRCAPQ14761 206 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 POU6F1Q14863 301 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 PLA2G4EQ3MJ16 856 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 MAP9Q49MG5 647 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 KHDC1Q4VXA5 237 aaKnown RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 TMEM220Q6QAJ8 160 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 IGF2-ASQ6U949 168 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 WASH2PQ6VEQ5 465 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 NLRP9Q7RTR0 991 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 AMZ2Q86W34 360 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 TRIM48Q8IWZ4 208 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 RASGEF1CQ8N431 466 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 OR52K1Q8NGK4 314 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 ATXN7L3BQ96GX2 97 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 AHCYL2Q96HN2 611 aaKnown RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 ZNF578Q96N58 590 aaPredicted RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 KCNF1Q9H3M0 494 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 EPB41L1Q9H4G0 881 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 WASH6PQ9NQA3 447 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 EIF2B3Q9NR50 452 aaKnown RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 KCNK4Q9NYG8 393 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 AKAP7Q9P0M2 348 aaPredicted RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 TTC7AQ9ULT0 858 aaPredicted RBP13.19□□□□□ -0.3
CLK3-213ENST00000563842 KCTD3Q9Y597 815 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 PCDHGA8Q9Y5G5 932 aa13.19□□□□□ -0.3
CLK3-213ENST00000563842 TRBV23OR9-2A0A075B6M9 112 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 A6NCN8 305 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 PDZK1P1A8MUH7 402 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 B4GAT1O43505 415 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 BRINP1O60477 761 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 POP7O75817 140 aaKnown RBP13.18□□□□□ -0.3
CLK3-213ENST00000563842 MPOP05164 745 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 ETS1P14921 441 aa13.18□□□□□ -0.3
CLK3-213ENST00000563842 XRCC1P18887 633 aaPredicted RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms