RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 TBR1Q16650 682 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 KHDC1Q4VXA5 237 aaKnown RBP16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 ANKS6Q68DC2 871 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 CEACAM20Q6UY09 585 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 TMEM26Q6ZUK4 368 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 C11orf96Q7Z7L8 435 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 FAM129CQ86XR2 697 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 PLXDC1Q8IUK5 500 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 RNF214Q8ND24 703 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 BRSK1Q8TDC3 778 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 P3H4Q92791 437 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 EXTL1Q92935 676 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 MRGPRX2Q96LB1 330 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 TBC1D10AQ9BXI6 508 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 STARD5Q9NSY2 213 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 OGFRQ9NZT2 677 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 HACD3Q9P035 362 aa16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 ZNF624Q9P2J8 865 aaPredicted RBP16.96■□□□□ 0.31
VPS9D1-203ENST00000563798 CAPN5O15484 640 aaPredicted RBP16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 RAD1O60671 282 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 TNNT1P13805 278 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 SLC19A1P41440 591 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 XRCC4Q13426 336 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 PPP2R5EQ16537 467 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 INSCQ1MX18 579 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 ATP13A5Q4VNC0 1218 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 SIRPB2Q5JXA9 342 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 C11orf63Q6NUN7 778 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 CRTC3Q6UUV7 619 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 RBM12BQ8IXT5 1001 aaKnown RBP16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 CCDC170Q8IYT3 715 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 CACNA2D3Q8IZS8 1091 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 ZNF567Q8N184 647 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 IL22RA1Q8N6P7 574 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 OXNAD1Q96HP4 312 aaPredicted RBP16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 QKIQ96PU8 341 aaKnown RBP eCLIP16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 ZMYND15Q9H091 742 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 IL26Q9NPH9 171 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 POT1Q9NUX5 634 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 SIDT1Q9NXL6 827 aaKnown RBP16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 UBP1Q9NZI7 540 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 IL17CQ9P0M4 197 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 TRHDEQ9UKU6 1024 aa16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 TMEM184BQ9Y519 407 aaPredicted RBP16.95■□□□□ 0.3
VPS9D1-203ENST00000563798 TENM4Q6N022 2769 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 A8MU76 341 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 PPFIA2O75334 1257 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 VIPP01282 170 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 SLC4A1P02730 911 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 LIFP15018 202 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 BRAFP15056 766 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 HLA-DPA1P20036 260 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 MAP4P27816 1152 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 DMPKQ09013 629 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 TMEM115Q12893 351 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 MPP3Q13368 585 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 SLC1A5Q15758 541 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 SNAP47Q5SQN1 464 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 BBS12Q6ZW61 710 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 JPH3Q8WXH2 748 aaPredicted RBP16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 RBM41Q96IZ5 413 aaKnown RBP16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 SLC45A3Q96JT2 553 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 C9orf72Q96LT7 481 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 ARHGAP9Q9BRR9 750 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 OSGEPL1Q9H4B0 414 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 PCDHA13Q9Y5I0 950 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 SLC30A1Q9Y6M5 507 aa16.94■□□□□ 0.3
VPS9D1-203ENST00000563798 MTX2O75431 263 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 UBXN7O94888 489 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 VCLP18206 1134 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 IDSP22304 550 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 SPAM1P38567 509 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 COPS2P61201 443 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 CYP4F2P78329 520 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 MAP7Q14244 749 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 KAZNQ674X7 775 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 PID1Q7Z2X4 250 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 ZC3H18Q86VM9 953 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 NLGN4XQ8N0W4 816 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 DDHD1Q8NEL9 900 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 NLGN4YQ8NFZ3 816 aaPredicted RBP16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 CALR3Q96L12 384 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 RAB33BQ9H082 229 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 ADNPQ9H2P0 1102 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 TRIT1Q9H3H1 467 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 GOLPH3Q9H4A6 298 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 BPIFA1Q9NP55 256 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 SLC40A1Q9NP59 571 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 GEMIN8Q9NWZ8 242 aaKnown RBP16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 KLHL8Q9P2G9 620 aaPredicted RBP16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 EPHA6Q9UF33 1036 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 EFR3BQ9Y2G0 817 aa16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 DNMT3AQ9Y6K1 912 aaPredicted RBP16.93■□□□□ 0.3
VPS9D1-203ENST00000563798 PDZK1P1A8MUH7 402 aa16.92■□□□□ 0.3
VPS9D1-203ENST00000563798 APOC4-APOC2K7ER74 178 aa16.92■□□□□ 0.3
VPS9D1-203ENST00000563798 DLGAP3O95886 979 aa16.92■□□□□ 0.3
VPS9D1-203ENST00000563798 APOC2P02655 101 aa16.92■□□□□ 0.3
VPS9D1-203ENST00000563798 CHRNA4P43681 627 aa16.92■□□□□ 0.3
VPS9D1-203ENST00000563798 MAPK9P45984 424 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms