RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PAAF1Q9BRP4 392 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 LRRC4Q9HBW1 653 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 CRTAC1Q9NQ79 661 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 TBC1D13Q9NVG8 400 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 TMEM181Q9P2C4 612 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 NLRC5Q86WI3 1866 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 MYO16Q9Y6X6 1858 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 BCLAF3A2AJT9 711 aaKnown RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 A8MX80 341 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 NTRK1P04629 796 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 GOT1P17174 413 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 IL10P22301 178 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 FMO4P31512 558 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 ABCG1P45844 678 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 GRIA4P48058 902 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 Q5BKY6 102 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 OTUD1Q5VV17 481 aaPredicted RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 CCBE1Q6UXH8 406 aaPredicted RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 STRADAQ7RTN6 431 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 SLC22A17Q8WUG5 538 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 RTP4Q96DX8 246 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 DSN1Q9H410 356 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 CAB39LQ9H9S4 337 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 CHST12Q9NRB3 414 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 TMPRSS4Q9NRS4 437 aa13.2□□□□□ -0.3
CLK3-206ENST00000562078 ABI2Q9NYB9 513 aaPredicted RBP13.2□□□□□ -0.3
CLK3-206ENST00000562078 PATJQ8NI35 1801 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 CENPXA8MT69 81 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 C12orf71A8MTZ7 269 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 ZNF487B1APH4 448 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 CKBP12277 381 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 RRM2P31350 389 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 OR3A3P47888 321 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 NAB1Q13506 487 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 SLC25A52Q3SY17 297 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 AGKQ53H12 422 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 AGAP6Q5VW22 663 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 FAM205BPQ63HN1 556 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 CDKL3Q8IVW4 592 aaPredicted RBP13.19□□□□□ -0.3
CLK3-206ENST00000562078 MUL1Q969V5 352 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 OMA1Q96E52 524 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 AGAP4Q96P64 663 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 MKRN2Q9H000 416 aaKnown RBP13.19□□□□□ -0.3
CLK3-206ENST00000562078 LTB4R2Q9NPC1 389 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 SARDHQ9UL12 918 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 TTC3P53804 2025 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 ISPDA4D126 451 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 SSX4O60224 188 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 NDUFS2O75306 463 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 C7P10643 843 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 PSMA4P25789 261 aaKnown RBP13.19□□□□□ -0.3
CLK3-206ENST00000562078 GTF2E2P29084 291 aaKnown RBP13.19□□□□□ -0.3
CLK3-206ENST00000562078 PKLRP30613 574 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 PTGS2P35354 604 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 TGFBR1P36897 503 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 GARSP41250 739 aaKnown RBP13.19□□□□□ -0.3
CLK3-206ENST00000562078 HTR2BP41595 481 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 TKTL1P51854 596 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 STX5Q13190 355 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 DUSP7Q16829 419 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 PAN2Q504Q3 1202 aaKnown RBP13.19□□□□□ -0.3
CLK3-206ENST00000562078 OTUD3Q5T2D3 398 aaPredicted RBP13.19□□□□□ -0.3
CLK3-206ENST00000562078 IRAK1BP1Q5VVH5 260 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 IDO2Q6ZQW0 420 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 LINC00299Q6ZSB3 139 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 HFE2Q6ZVN8 426 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 FAM35AQ86V20 835 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 DCLK2Q8N568 766 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 IL17RDQ8NFM7 739 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 OR13J1Q8NGT2 312 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 TRIM63Q969Q1 353 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 LRCH3Q96II8 777 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 PGLYRP2Q96PD5 576 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 ATP13A2Q9NQ11 1180 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 TMEM30AQ9NV96 361 aa13.19□□□□□ -0.3
CLK3-206ENST00000562078 A0A1W2PQ72 361 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 CCDC78A2IDD5 438 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 MYBPHLA2RUH7 354 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 MRASO14807 208 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 NDST3O95803 873 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 ALBP02768 609 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 ERVK-10P10266 1014 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 SERPINB10P48595 397 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 NAGLUP54802 743 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 GALNT1Q10472 559 aaPredicted RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 BNIP2Q12982 314 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 CBX2Q14781 532 aaPredicted RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 COLEC12Q5KU26 742 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 BRMS1LQ5PSV4 323 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 SYPL2Q5VXT5 272 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 NCBP2-AS2Q69YL0 99 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 CES3Q6UWW8 571 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 ZNF598Q86UK7 904 aaKnown RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 FAM109AQ8N4B1 249 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 SDCCAG3Q96C92 435 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 PCED1BQ96HM7 432 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 SLC45A3Q96JT2 553 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 KCTD14Q9BQ13 255 aaPredicted RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 IL1RL2Q9HB29 575 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 RPRD1BQ9NQG5 326 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms