RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KLHL8Q9P2G9 620 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-208ENST00000559119 TBX20Q9UMR3 447 aa4.05□□□□□ -1.76
VPS13C-208ENST00000559119 COL5A2P05997 1499 aaPredicted RBP4.05□□□□□ -1.76
VPS13C-208ENST00000559119 A0A1W2PQM1 296 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 C15orf62A8K5M9 175 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 MAGEB17A8MXT2 336 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 MLYCDO95822 493 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 CLPTM1O96005 669 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 LIPFP07098 398 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 HMBSP08397 361 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 ITGA3P26006 1051 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 PAFAH1B1P43034 410 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 GALNT2Q10471 571 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 TAF12Q16514 161 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 UGP2Q16851 508 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 ADAMTSL4-AS1Q5T5F5 129 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 ALS2CLQ60I27 953 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 Q75L30 129 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 ANKRD18AQ8IVF6 992 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 MRGPRDQ8TDS7 321 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 GRHL3Q8TE85 626 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 SMC6Q96SB8 1091 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 RHNO1Q9BSD3 238 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 PTTG2Q9NZH5 202 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 SARDHQ9UL12 918 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 OBSCNQ5VST9 7968 aa4.04□□□□□ -1.76
VPS13C-208ENST00000559119 EIF4E1BA6NMX2 242 aaKnown RBP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 SLCO1B7G3V0H7 640 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 EIF3FO00303 357 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 HNRNPA1P09651 372 aaKnown RBP eCLIP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 LIFP15018 202 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 PIP4K2AP48426 406 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 SNRPD1P62314 119 aaKnown RBP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 CDC16Q13042 620 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 OLIG2Q13516 323 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 GTDC1Q4AE62 458 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 BHLHB9Q6PI77 547 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 TRIM65Q6PJ69 517 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 LDHAL6AQ6ZMR3 332 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 PM20D2Q8IYS1 436 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 OR1J2Q8NGS2 313 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 SAAL1Q96ER3 474 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 MAELQ96JY0 434 aaKnown RBP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 C18orf12Q96KH6 178 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 SEMA3CQ99985 751 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 RANBP17Q9H2T7 1088 aaKnown RBP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 CCDC177Q9NQR7 707 aaPredicted RBP4.03□□□□□ -1.76
VPS13C-208ENST00000559119 MAU2Q9Y6X3 613 aa4.03□□□□□ -1.76
VPS13C-208ENST00000559119 EIF3CLB5ME19 914 aaKnown RBP4.02□□□□□ -1.77
VPS13C-208ENST00000559119 SLC22A2O15244 555 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 RHBDL3P58872 404 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 PPARDQ03181 441 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 CXorf66Q5JRM2 361 aaPredicted RBP4.02□□□□□ -1.77
VPS13C-208ENST00000559119 NDUFAF5Q5TEU4 345 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 LCN10Q6JVE6 187 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 ATG9AQ7Z3C6 839 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 SLC5A8Q8N695 610 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 EMC1Q8N766 993 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 AMER3Q8N944 861 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 SLX1AQ9BQ83 275 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 GJD2Q9UKL4 321 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 INTS6Q9UL03 887 aaKnown RBP4.02□□□□□ -1.77
VPS13C-208ENST00000559119 CAMK2AQ9UQM7 478 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 GPR52Q9Y2T5 361 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 ZHX2Q9Y6X8 837 aa4.02□□□□□ -1.77
VPS13C-208ENST00000559119 C1orf226A1L170 272 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 PRR32B1ATL7 298 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 JRKO75564 520 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 WISP2O76076 250 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 NKX2-2O95096 273 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 BMP10O95393 424 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 FAM157CP0CG43 387 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 GATA1P15976 413 aaPredicted RBP4.01□□□□□ -1.77
VPS13C-208ENST00000559119 ANXA7P20073 488 aaKnown RBP4.01□□□□□ -1.77
VPS13C-208ENST00000559119 EIF3BP55884 814 aaKnown RBP4.01□□□□□ -1.77
VPS13C-208ENST00000559119 TLE2Q04725 743 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 PNLIPRP3Q17RR3 467 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 LCE3EQ5T5B0 92 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 ARHGEF16Q5VV41 709 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 PWWP2BQ6NUJ5 590 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 ZNF613Q6PF04 617 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 TSSK4Q6SA08 328 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 ZNF614Q8N883 585 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 PSPC1Q8WXF1 523 aaKnown RBP4.01□□□□□ -1.77
VPS13C-208ENST00000559119 TMEM143Q96AN5 459 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 AGAP3Q96P47 875 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 PLCXD1Q9NUJ7 323 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 TMEM181Q9P2C4 612 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 COPG2Q9UBF2 871 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 UBA2Q9UBT2 640 aaPredicted RBP4.01□□□□□ -1.77
VPS13C-208ENST00000559119 DNAJB4Q9UDY4 337 aa4.01□□□□□ -1.77
VPS13C-208ENST00000559119 KCNK5O95279 499 aa4□□□□□ -1.77
VPS13C-208ENST00000559119 LDHAP00338 332 aaKnown RBP4□□□□□ -1.77
VPS13C-208ENST00000559119 TPOP07202 933 aa4□□□□□ -1.77
VPS13C-208ENST00000559119 EPHA2P29317 976 aa4□□□□□ -1.77
VPS13C-208ENST00000559119 PRCPP42785 496 aa4□□□□□ -1.77
VPS13C-208ENST00000559119 VAMP2P63027 116 aa4□□□□□ -1.77
VPS13C-208ENST00000559119 TRPC3Q13507 836 aa4□□□□□ -1.77
VPS13C-208ENST00000559119 BAK1Q16611 211 aa4□□□□□ -1.77
VPS13C-208ENST00000559119 GRAMD1BQ3KR37 738 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms