RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 VNN2O95498 520 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TRUB2O95900 331 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 BMP15O95972 392 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CH25HO95992 272 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 GH2P01242 217 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 FGBP02675 491 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TPOP07202 933 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 QDPRP09417 244 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 PSG1P11464 419 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 IFNAR1P17181 557 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CD58P19256 250 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 GPTP24298 496 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 PTAFRP25105 342 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TKTP29401 623 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 EEF1DP29692 281 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 BDKRB2P30411 391 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CTNNA1P35221 906 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 COPB2P35606 906 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TNNT3P45378 269 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 MMP13P45452 471 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 ENTPD1P49961 510 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 MXI1P50539 228 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 RASSF2P50749 326 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 NUDT6P53370 316 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 POLGP54098 1239 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 HNRNPH2P55795 449 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 CD81P60033 236 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 ZP1P60852 638 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CSNK2A1P68400 391 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 ABATP80404 500 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 BNC1Q01954 994 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 FOXM1Q08050 763 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 ST3GAL1Q11201 340 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TROAPQ12815 778 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TRAF3Q13114 568 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 DHX34Q14147 1143 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 KRT33BQ14525 404 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 COG2Q14746 738 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TRIP6Q15654 476 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 EZH2Q15910 746 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 SNAPC1Q16533 368 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CTF1Q16619 201 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 MEP1AQ16819 746 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 C15orf59Q2T9L4 293 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 LEXMQ3ZCV2 418 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CRY2Q49AN0 593 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 SETMARQ53H47 684 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 KLHL26Q53HC5 615 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 DCAF6Q58WW2 860 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 TCP11X2Q5H9J9 407 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 MANEAQ5SRI9 462 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 FNBP1LQ5T0N5 605 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 MPP7Q5T2T1 576 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 FAM69BQ5VUD6 431 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 MORN5Q5VZ52 161 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 AWAT2Q6E213 333 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 LCN10Q6JVE6 187 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 KRT80Q6KB66 452 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 KCTD18Q6PI47 426 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 FIGLAQ6QHK4 219 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 PPP1R21Q6ZMI0 780 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 COLCA1Q6ZS62 124 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 USP43Q70EL4 1123 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 INTS8Q75QN2 995 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 TRAPPC11Q7Z392 1133 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CACNA2D4Q7Z3S7 1137 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CENPVQ7Z7K6 275 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 IQCHQ86VS3 1027 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CHERPQ8IWX8 916 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 ZNF34Q8IZ26 560 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 OR8H3Q8N146 312 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 AFAP1Q8N556 730 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 SLC4A11Q8NBS3 891 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 SMRP1Q8NCR6 262 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 MCUQ8NE86 351 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CSNK2A3Q8NEV1 391 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 OR2AJ1Q8NGZ0 328 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 OR5R1Q8NH85 324 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 SPATA22Q8NHS9 363 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 KIF18AQ8NI77 898 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 WDR20Q8TBZ3 569 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 OTULINQ96BN8 352 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 ZNF653Q96CK0 615 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 SIPA1Q96FS4 1042 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 SPATA17Q96L03 361 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 NLRP4Q96MN2 994 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 ZNF582Q96NG8 517 aaPredicted RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 SEMA3CQ99985 751 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 KXD1Q9BQD3 176 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 ABHD6Q9BV23 337 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 C1QTNF1Q9BXJ1 281 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 MRPL1Q9BYD6 325 aaKnown RBP1.62□□□□□ -2.15
USP3-209ENST00000558925 EDEM3Q9BZQ6 932 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 KCNK15Q9H427 330 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 RAD21L1Q9H4I0 556 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 CATSPERBQ9H7T0 1116 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 OSER1Q9NX31 292 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 PSD3Q9NYI0 1048 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 C1RLQ9NZP8 487 aa1.62□□□□□ -2.15
USP3-209ENST00000558925 KLHL9Q9P2J3 617 aa1.62□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms