RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ERVK-18Q9QC07 812 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 CAB39Q9Y376 341 aaPredicted RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 CAPN15O75808 1086 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 CYP7B1O75881 506 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 B3GAT3O94766 335 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 PRKD3O94806 890 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 GOT2P00505 430 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 CD4P01730 458 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 GPIP06744 558 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 FSCN1Q16658 493 aaKnown RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 FAM214AQ32MH5 1076 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 DENND5AQ6IQ26 1287 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 CRYBG2Q8N1P7 616 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 ARRDC4Q8NCT1 418 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 OR13F1Q8NGS4 319 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 SLC22A17Q8WUG5 538 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 TMEM40Q8WWA1 233 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 SLC35B4Q969S0 331 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 BBS2Q9BXC9 721 aa11.24□□□□□ -0.61
LDLR-208ENST00000558518 COL11A1P12107 1806 aaPredicted RBP11.24□□□□□ -0.61
LDLR-208ENST00000558518 DFNA5O60443 496 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 ABCB7O75027 752 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 PABPC1P11940 636 aaKnown RBP11.23□□□□□ -0.61
LDLR-208ENST00000558518 BRCC3P46736 316 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 CLCN5P51795 746 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 DGKEP52429 567 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 COPZ1P61923 177 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 INAVAQ3KP66 663 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 GTDC1Q4AE62 458 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 ZNF540Q8NDQ6 660 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 BHMTQ93088 406 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 PSMG2Q969U7 264 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 VAT1Q99536 393 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 RIC8BQ9NVN3 520 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 INTS10Q9NVR2 710 aaKnown RBP11.23□□□□□ -0.61
LDLR-208ENST00000558518 QSER1Q2KHR3 1735 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 RGPD3A6NKT7 1758 aaPredicted RBP11.23□□□□□ -0.61
LDLR-208ENST00000558518 RGPD4Q7Z3J3 1758 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 FER1L6Q2WGJ9 1857 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 A0A1W2PQ67 120 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 H0YJX3 145 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 TLR5O60602 858 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 NDUFS3O75489 264 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 SULT1C4O75897 302 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 PTGR1Q14914 329 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 MARC1Q5VT66 337 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 PRMT9Q6P2P2 845 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 TXNDC11Q6PKC3 985 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 DHRS4L2Q6PKH6 230 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 CILP2Q8IUL8 1156 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 LRRC52Q8N7C0 313 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 OR6J1Q8NGC5 347 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 OR52B6Q8NGF0 335 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 SKA2Q8WVK7 121 aaPredicted RBP11.23□□□□□ -0.61
LDLR-208ENST00000558518 UBE2FQ969M7 185 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.23□□□□□ -0.612e-6■■■■□ 26.2
LDLR-208ENST00000558518 CD320Q9NPF0 282 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 LEF1Q9UJU2 399 aaPredicted RBP11.23□□□□□ -0.61
LDLR-208ENST00000558518 ADAMTS5Q9UNA0 930 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 GIT1Q9Y2X7 761 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 ANGPTL3Q9Y5C1 460 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 PCDHGA11Q9Y5H2 935 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 E5RI56 91 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 SNPHO15079 494 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 SOAT2O75908 522 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 LRATO95237 230 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 PGLSO95336 258 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 IDO1P14902 403 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 PGFP49763 221 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 CLCNKBP51801 687 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 RPL38P63173 70 aaKnown RBP11.23□□□□□ -0.61
LDLR-208ENST00000558518 IFITM3Q01628 133 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 DCAF4L1Q3SXM0 396 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 C6orf141Q5SZD1 244 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 LCN8Q6JVE9 175 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 TMC5Q6UXY8 1006 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 FRA10AC1Q70Z53 315 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 AHSA2Q719I0 299 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 ZUFSPQ96AP4 578 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 GPR21Q99679 349 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.23□□□□□ -0.61
LDLR-208ENST00000558518 ZNF112Q9UJU3 913 aa11.23□□□□□ -0.61
LDLR-208ENST00000558518 OAS3Q9Y6K5 1087 aaKnown RBP11.23□□□□□ -0.61
LDLR-208ENST00000558518 A8MX80 341 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 SOCS7O14512 581 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 FKBP9O95302 570 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 ANGPTL1O95841 491 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 G6PDP11413 515 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 CDKN1CP49918 316 aaPredicted RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 HTR6P50406 440 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 CTU2Q2VPK5 515 aaKnown RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 SULT1C3Q6IMI6 304 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 BLOC1S3Q6QNY0 202 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 FKBP9P1Q75LS8 142 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 SPATC1Q76KD6 591 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 RBM23Q86U06 439 aaKnown RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 UBE2J2Q8N2K1 259 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 PNPT1Q8TCS8 783 aaKnown RBP11.22□□□□□ -0.61
LDLR-208ENST00000558518 ZFYVE19Q96K21 471 aa11.22□□□□□ -0.61
LDLR-208ENST00000558518 TMEM209Q96SK2 561 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms