RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 DAG1Q14118 895 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 CYP51A1Q16850 503 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 FAM102AQ5T9C2 384 aaPredicted RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 GLB1LQ6UWU2 654 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 IDO2Q6ZQW0 420 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 ADAMTSL2Q86TH1 951 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 C3orf58Q8NDZ4 430 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 FAM110BQ8TC76 370 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 SLC22A17Q8WUG5 538 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 HTR3CQ8WXA8 447 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 ZNF566Q969W8 418 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 DEPDC7Q96QD5 511 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 GPR22Q99680 433 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 ZBED2Q9BTP6 218 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 DGCR6LQ9BY27 220 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 TLR9Q9NR96 1032 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 TMEM161AQ9NX61 479 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 UBA2Q9UBT2 640 aaPredicted RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 TSC2P49815 1807 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 ALPK3Q96L96 1907 aa10.8□□□□□ -0.68
USP3-206ENST00000558157 MKI67P46013 3256 aaKnown RBP10.8□□□□□ -0.68
USP3-206ENST00000558157 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 TCRBV5S2A0A599 114 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 TBC1D4O60343 1298 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 B4GALT3O60512 393 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 SUPT7LO94864 414 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 HTR1AP08908 422 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 MYCLP1P12525 358 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 PDGFRAP16234 1089 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 EN2P19622 333 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 ITGB8P26012 769 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 OXTRP30559 389 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 DEFA1P59665 94 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 DEFA3P59666 94 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 LILRA4P59901 499 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CRADDP78560 199 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 ZNF45Q02386 682 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 SOWAHAQ2M3V2 549 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 ADPRMQ3LIE5 342 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 ZNF280DQ6N043 979 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 PMF1Q6P1K2 205 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CCDC103Q8IW40 242 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 ELMOD2Q8IZ81 293 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 PROX1Q92786 737 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 GLMNQ92990 594 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 TRIM43Q96BQ3 446 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 VWCEQ96DN2 955 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CCDC126Q96EE4 140 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CYP2S1Q96SQ9 504 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 FEM1AQ9BSK4 669 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 TRIM54Q9BYV2 358 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 SLIRPQ9GZT3 109 aaKnown RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 TJP2Q9UDY2 1190 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 FBXO5Q9UKT4 447 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 STAP1Q9ULZ2 295 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 NME7Q9Y5B8 376 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 PMF1-BGLAPU3KQ54 211 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 LTBP2Q14767 1821 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 E2F8A0AVK6 867 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 UBXN8O00124 270 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 DLX3O60479 287 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 PRSS23O95084 383 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 SNX4O95219 450 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 APOA1P02647 267 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 ALPLP05186 524 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 TRAPPC2P0DI81 140 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 TRAPPC2BP0DI82 140 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CD19P15391 556 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CYP2F1P24903 491 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 GMPRP36959 345 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 DDOSTP39656 456 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CCR10P46092 362 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 GATMP50440 423 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 TUSC3Q13454 348 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 PRPSAP1Q14558 356 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 NPTX1Q15818 432 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 UPP1Q16831 310 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 C15orf59Q2T9L4 293 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 ZFP69Q49AA0 526 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 NOMO2Q5JPE7 1267 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 P2RY8Q86VZ1 359 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 RALGPS2Q86X27 583 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 CLYBLQ8N0X4 340 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 COLGALT1Q8NBJ5 622 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 CHDHQ8NE62 594 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 RXFP2Q8WXD0 754 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 VPS39Q96JC1 886 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 SCYL1Q96KG9 808 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 ZNF300Q96RE9 604 aaPredicted RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 BTBD2Q9BX70 525 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 ELAC1Q9H777 363 aaKnown RBP10.79□□□□□ -0.68
USP3-206ENST00000558157 ABCB10Q9NRK6 738 aa10.79□□□□□ -0.68
USP3-206ENST00000558157 PDZK1P1A8MUH7 402 aa10.78□□□□□ -0.68
USP3-206ENST00000558157 H0Y626 953 aa10.78□□□□□ -0.68
USP3-206ENST00000558157 CCRL2O00421 344 aa10.78□□□□□ -0.68
USP3-206ENST00000558157 HCRTO43612 131 aa10.78□□□□□ -0.68
USP3-206ENST00000558157 MRPS14O60783 128 aaKnown RBP10.78□□□□□ -0.68
USP3-206ENST00000558157 XYLBO75191 536 aa10.78□□□□□ -0.68
USP3-206ENST00000558157 MFN2O95140 757 aa10.78□□□□□ -0.68
USP3-206ENST00000558157 TRIM16O95361 564 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms