RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 C14orf80Q86SX3 495 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 ZFAND4Q86XD8 727 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 GALNT13Q8IUC8 556 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 MINDY2Q8NBR6 621 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 C3orf58Q8NDZ4 430 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 OR56A4Q8NGH8 313 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 OR4L1Q8NH43 312 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 TANKQ92844 425 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 PABPC5Q96DU9 382 aaKnown RBP16.15■□□□□ 0.18
SHMT2-232ENST00000557487 HMCESQ96FZ2 354 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 GLT1D1Q96MS3 346 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 RNF145Q96MT1 663 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 CCDC115Q96NT0 180 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 NSUN5Q96P11 429 aaKnown RBP16.15■□□□□ 0.18
SHMT2-232ENST00000557487 MTG1Q9BT17 334 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-232ENST00000557487 UGT2B28Q9BY64 529 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 RAD21L1Q9H4I0 556 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 FANCEQ9HB96 536 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 VPS9D1Q9Y2B5 631 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 AP3M1Q9Y2T2 418 aa16.15■□□□□ 0.18
SHMT2-232ENST00000557487 MOXD2PA6NHM9 499 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 H3BMM5 538 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 KPNA4O00629 521 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-232ENST00000557487 PPP6CO00743 305 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 SERPINB7O75635 380 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 ANXA6P08133 673 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 CD247P20963 164 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 CD9P21926 228 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 MATN1P21941 496 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 ETFBP38117 255 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 PSMD7P51665 324 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 CAP1Q01518 475 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 TSPY1Q01534 308 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 GSTM4Q03013 218 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 CHRNB3Q05901 458 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 NR1D2Q14995 579 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 EML3Q32P44 896 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 GTF2IRD2BQ6EKJ0 949 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 GPR142Q7Z601 462 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 GTF2IRD2Q86UP8 949 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 HOMEZQ8IX15 550 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 SVOPLQ8N434 492 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 MUS81Q96NY9 551 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 KCNA7Q96RP8 456 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 FEM1AQ9BSK4 669 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 NAA50Q9GZZ1 169 aaKnown RBP16.14■□□□□ 0.17
SHMT2-232ENST00000557487 USE1Q9NZ43 259 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 PCDHGA4Q9Y5G9 962 aa16.14■□□□□ 0.17
SHMT2-232ENST00000557487 M0QZ92 97 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 M0QZQ0 153 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 MSI1O43347 362 aaKnown RBP16.13■□□□□ 0.17
SHMT2-232ENST00000557487 NCK1P16333 377 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ZNF182P17025 639 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-232ENST00000557487 CRHBPP24387 322 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 HOXC8P31273 242 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 PLCL1Q15111 1095 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 PARP15Q460N3 678 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 TFAP2DQ7Z6R9 452 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 SCD5Q86SK9 330 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ZC3H7AQ8IWR0 971 aaKnown RBP16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ZNF683Q8IZ20 524 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 OR8J3Q8NGG0 315 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 SCAMP5Q8TAC9 235 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 SNX19Q92543 992 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 VPS33AQ96AX1 596 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 SLC39A13Q96H72 371 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ZNF347Q96SE7 839 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 POLR1EQ9GZS1 481 aaKnown RBP16.13■□□□□ 0.17
SHMT2-232ENST00000557487 NTN4Q9HB63 628 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 HEBP1Q9NRV9 189 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 IGLV3-10A0A075B6K4 115 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 OR51F1A6NGY5 319 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 H0Y858 1186 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 BOLA2-SMG1P6H3BVE0 249 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 UPK1AO00322 258 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 TNFRSF10BO14763 440 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 TBC1D4O60343 1298 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ECI2O75521 394 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 RHOBTB1O94844 696 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 CDH3P22223 829 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 CPT1AP50416 773 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 MAXP61244 160 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 UFM1P61960 85 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ZNF846Q147U1 533 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 FUT11Q495W5 492 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 PIK3R6Q5UE93 754 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 XAF1Q6GPH4 301 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ZDHHC13Q8IUH4 622 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 CLEC4FQ8N1N0 589 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ZNF555Q8NEP9 628 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 OR52E4Q8NGH9 312 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ITFG1Q8TB96 612 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 SEPHS2Q99611 448 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 WDR12Q9GZL7 423 aaKnown RBP16.13■□□□□ 0.17
SHMT2-232ENST00000557487 GORASP2Q9H8Y8 452 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 SEMA4BQ9NPR2 832 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-232ENST00000557487 TLR9Q9NR96 1032 aa16.13■□□□□ 0.17
SHMT2-232ENST00000557487 ARL5CA6NH57 179 aa16.12■□□□□ 0.17
SHMT2-232ENST00000557487 LRRC14BA6NHZ5 514 aa16.12■□□□□ 0.17
SHMT2-232ENST00000557487 C9JVG2 144 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms