RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	RNF181	Q9P0P0	153 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	UXT	Q9UBK9	157 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	UBA2	Q9UBT2	640 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	MALT1	Q9UDY8	824 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	FBXW11	Q9UKB1	542 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPC6	Q9Y625	555 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SPATA31A6	Q5VVP1	1343 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CENPX	A8MT69	81 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005		E7ESA3	106 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SSNA1	O43805	119 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	AHSG	P02765	367 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	KRT6B	P04259	564 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	POR	P16435	677 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	IMPDH1	P20839	514 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GLDC	P23378	1020 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	DGKA	P23743	735 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GRK4	P32298	578 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PTPN9	P43378	593 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	KRT6C	P48668	564 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC26A2	P50443	739 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PPP1R8	Q12972	351 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	MZT2A	Q6P582	158 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCDC149	Q6ZUS6	474 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	MAVS	Q7Z434	540 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TAC4	Q86UU9	113 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	KBTBD6	Q86V97	674 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RIOX2	Q8IUF8	465 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	DENND1C	Q8IV53	801 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR8H3	Q8N146	312 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	NKAP	Q8N5F7	415 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GANC	Q8TET4	914 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SELENOM	Q8WWX9	145 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC45A3	Q96JT2	553 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PPP3R2	Q96LZ3	170 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SEMA3C	Q99985	751 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CRISPLD1	Q9H336	500 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TUT1	Q9H6E5	874 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RPF2	Q9H7B2	306 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ATP13A1	Q9HD20	1204 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	C8orf4	Q9NR00	106 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ARL15	Q9NXU5	204 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ERVK-18	Q9QC07	812 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	FUOM	A2VDF0	154 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF197	O14709	1029 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	KRT6A	P02538	564 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	NTRK1	P04629	796 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYP11A1	P05108	521 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PGR	P06401	933 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRKAR1A	P10644	381 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CD36	P16671	472 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GTF2E2	P29084	291 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CD83	Q01151	205 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GRB7	Q14451	532 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF829	Q3KNS6	432 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TTLL9	Q3SXZ7	439 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TSTD2	Q5T7W7	516 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PPP4R4	Q6NUP7	873 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRR23C	Q6ZRP0	262 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	HFE2	Q6ZVN8	426 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CHSY3	Q70JA7	882 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPR180	Q86V85	440 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TMEM126B	Q8IUX1	230 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYP4Z2P	Q8N1L4	340 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TXNDC5	Q8NBS9	432 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	VANGL1	Q8TAA9	524 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TOP1MT	Q969P6	601 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GTPBP3	Q969Y2	492 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SIGLEC10	Q96LC7	697 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	FTHL17	Q9BXU8	183 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SP140L	Q9H930	580 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	MOV10	Q9HCE1	1003 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	LAMB2	P55268	1798 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005		A0A1W2PQ67	120 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005		G3V2L1	256 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RFXANK	O14593	260 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RGL2	O15211	777 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPR182	O15218	404 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	CPNE3	O75131	537 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RPLP0	P05388	317 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	SERPINF2	P08697	491 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR4Q2	P0C623	313 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	MYL12A	P19105	171 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	EPOR	P19235	508 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	MATN1	P21941	496 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ITPKA	P23677	461 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RPS12	P25398	132 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	HOXA10	P31260	410 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GRIA2	P42262	883 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RXRG	P48443	463 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	DAG1	Q14118	895 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	GANAB	Q14697	944 aa	Known RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	PTPRN	Q16849	979 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	TIGD6	Q17RP2	521 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	RFX4	Q33E94	735 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF678	Q5SXM1	525 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	FIBCD1	Q8N539	461 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANKFN1	Q8N957	763 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	OTUB1	Q96FW1	271 aa	Predicted RBP	4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	STRA6	Q9BX79	667 aa		4.94	□□□□□ -1.62
SYNE2-223	ENST00000557005	ITPA	Q9BY32	194 aa		4.94	□□□□□ -1.62

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