RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 CCDC78A2IDD5 438 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 PRR19A6NJB7 356 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 KMOO15229 486 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 PPM1DO15297 605 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 KIF5CO60282 957 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 BRINP1O60477 761 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 SUN1O94901 812 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 MPOP05164 745 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 APRTP07741 180 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 F3P13726 295 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 HOXB3P14651 431 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF7P17097 686 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-219ENST00000555563 ALDH4A1P30038 563 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 AKT1P31749 480 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 HADHAP40939 763 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 GRIA1P42261 906 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 FASLGP48023 281 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 CLCNKAP51800 687 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 CTSCP53634 463 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 OR1D5P58170 312 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 B4GALNT1Q00973 533 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 CDH17Q12864 832 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 PPP1R21Q6ZMI0 780 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 GSTA5Q7RTV2 222 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 C11orf96Q7Z7L8 435 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 ZNF761Q86XN6 746 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-219ENST00000555563 DNAAF3Q8N9W5 541 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 COG1Q8WTW3 980 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 CCDC97Q96F63 343 aaPredicted RBP13.52□□□□□ -0.25
SHMT2-219ENST00000555563 PBKQ96KB5 322 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 TTC25Q96NG3 672 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 TIMM29Q9BSF4 260 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 FOXP3Q9BZS1 431 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 ASB8Q9H765 288 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 PRDM8Q9NQV8 689 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 CRLS1Q9UJA2 301 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 PYCARDQ9ULZ3 195 aa13.52□□□□□ -0.25
SHMT2-219ENST00000555563 A0A1W2PNU3 283 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-219ENST00000555563 PMS2P1A4D2B8 440 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 MROH6A6NGR9 719 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 OR2AG2A6NM03 316 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 B4GAT1O43505 415 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 SLC2A4P14672 509 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 MSH3P20585 1137 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 ITGALP20701 1170 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 MSNP26038 577 aaKnown RBP13.51□□□□□ -0.25
SHMT2-219ENST00000555563 MC4RP32245 332 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 GABREP78334 506 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 BASP1P80723 227 aaKnown RBP13.51□□□□□ -0.25
SHMT2-219ENST00000555563 SEPT7Q16181 437 aaKnown RBP13.51□□□□□ -0.25
SHMT2-219ENST00000555563 AMZ1Q400G9 498 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 MAP9Q49MG5 647 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 CCDC38Q502W7 563 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 C3orf38Q5JPI3 329 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 IYDQ6PHW0 289 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 DET1Q7L5Y6 550 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 NXPE1Q8N323 547 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 NAT14Q8WUY8 206 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 GRAMD1AQ96CP6 724 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 OSBPL9Q96SU4 736 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 FAM96AQ9H5X1 160 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 EIF2B3Q9NR50 452 aaKnown RBP13.51□□□□□ -0.25
SHMT2-219ENST00000555563 HOMER3Q9NSC5 361 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 NLE1Q9NVX2 485 aaPredicted RBP13.51□□□□□ -0.25
SHMT2-219ENST00000555563 SATB2Q9UPW6 733 aa13.51□□□□□ -0.25
SHMT2-219ENST00000555563 WDFY3Q8IZQ1 3526 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 KIR2DS5A0A0G2JLQ3 304 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 A0A0G2JNG1 304 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 AGAP14A8MT82 685 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 PDZK1P1A8MUH7 402 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 H7C0S8 307 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 KIR2DS3K7RE56 304 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 PGRMC1O00264 195 aaKnown RBP13.5□□□□□ -0.25
SHMT2-219ENST00000555563 GAS8O95995 478 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 PRSS56P0CW18 603 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 CSF2RBP32927 897 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 GPR3P46089 330 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 ARSDP51689 593 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 INHBCP55103 352 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 HHEXQ03014 270 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 KIR2DS5Q14953 304 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 FNBP1LQ5T0N5 605 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-219ENST00000555563 TTC27Q6P3X3 843 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 TMPRSS9Q7Z410 1059 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 SNX20Q7Z614 316 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 BEND7Q8N7W2 519 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-219ENST00000555563 STYXQ8WUJ0 223 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 ULK4Q96C45 1275 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 NUDT22Q9BRQ3 303 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 AP1M1Q9BXS5 423 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 POLR1BQ9H9Y6 1135 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 RDH14Q9HBH5 336 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 EPB41L5Q9HCM4 733 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 SARS2Q9NP81 518 aaKnown RBP13.5□□□□□ -0.25
SHMT2-219ENST00000555563 CASS4Q9NQ75 786 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 KCNK4Q9NYG8 393 aa13.5□□□□□ -0.25
SHMT2-219ENST00000555563 SCHIP1Q9P0W5 487 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-219ENST00000555563 TTC7AQ9ULT0 858 aaPredicted RBP13.5□□□□□ -0.25
SHMT2-219ENST00000555563 SNX12Q9UMY4 172 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms