RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 BMP8BP34820 402 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 PPP4CP60510 307 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 IRF9Q00978 393 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 USP17L24Q0WX57 530 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 GLYATQ6IB77 296 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 ZYG11AQ6WRX3 759 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 LIMS2Q7Z4I7 341 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 BMP8AQ7Z5Y6 402 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 TXNRD3Q86VQ6 643 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 COMMD7Q86VX2 200 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 ADGRG3Q86Y34 549 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 CBWD2Q8IUF1 395 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 ARFGAP1Q8N6T3 406 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 PLD5Q8N7P1 536 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 KCT2Q8NC54 265 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 DNERQ8NFT8 737 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 DNAJA4Q8WW22 397 aaPredicted RBP9.48□□□□□ -0.89
SIX4-202ENST00000554079 ELMO1Q92556 727 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 MAGEB10Q96LZ2 347 aaPredicted RBP9.48□□□□□ -0.89
SIX4-202ENST00000554079 P2RX7Q99572 595 aaKnown RBP9.48□□□□□ -0.89
SIX4-202ENST00000554079 HSD17B14Q9BPX1 270 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 SPNS1Q9H2V7 528 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 CMTM6Q9NX76 183 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 ZNF224Q9NZL3 707 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 SEPT9Q9UHD8 586 aaPredicted RBP9.48□□□□□ -0.89
SIX4-202ENST00000554079 DPP7Q9UHL4 492 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 AGO1Q9UL18 857 aaKnown RBP9.48□□□□□ -0.89
SIX4-202ENST00000554079 STAP1Q9ULZ2 295 aa9.48□□□□□ -0.89
SIX4-202ENST00000554079 MTF2Q9Y483 593 aaPredicted RBP9.48□□□□□ -0.89
SIX4-202ENST00000554079 WTIPA6NIX2 430 aaPredicted RBP9.47□□□□□ -0.89
SIX4-202ENST00000554079 FXYD1O00168 92 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 INPP4BO15327 924 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 MSH4O15457 936 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 KPNA6O60684 536 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 LRIG2O94898 1065 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 PGRP06401 933 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 MYL3P08590 195 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 SBK3P0C264 359 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 SNHG28P0DPA3 235 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 MTHFD1P11586 935 aaKnown RBP9.47□□□□□ -0.89
SIX4-202ENST00000554079 NPR3P17342 541 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 CHRM3P20309 590 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 ACO1P21399 889 aaKnown RBP9.47□□□□□ -0.89
SIX4-202ENST00000554079 CHMP24386 653 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 MAPKAPK2P49137 400 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 GBX2P52951 348 aaPredicted RBP9.47□□□□□ -0.89
SIX4-202ENST00000554079 FCGRTP55899 365 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 SP140Q13342 867 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 IRF5Q13568 498 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 KCNC3Q14003 757 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 ELOAQ14241 798 aaKnown RBP9.47□□□□□ -0.89
SIX4-202ENST00000554079 GRM7Q14831 915 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 PCBP1Q15365 356 aaKnown RBP eCLIP9.47□□□□□ -0.89
SIX4-202ENST00000554079 SETMARQ53H47 684 aaPredicted RBP9.47□□□□□ -0.89
SIX4-202ENST00000554079 FAM26DQ5JW98 314 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 ZNF691Q5VV52 312 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 RETSATQ6NUM9 610 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 PRMT9Q6P2P2 845 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 DNAJC24Q6P3W2 148 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 SCARA5Q6ZMJ2 495 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 RIMKLAQ8IXN7 391 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 PYCR2Q96C36 320 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 FOPNLQ96NB1 174 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 ACCSQ96QU6 501 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 SPATA9Q9BWV2 254 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 BBS2Q9BXC9 721 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 CYP3A43Q9HB55 503 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 CD93Q9NPY3 652 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 TMLHEQ9NVH6 421 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 SIRT5Q9NXA8 310 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 SLC9A2Q9UBY0 812 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 PGAP2Q9UHJ9 254 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 ADAM28Q9UKQ2 775 aa9.47□□□□□ -0.89
SIX4-202ENST00000554079 PNMA8CA0A1B0GUJ8 204 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 RPS10-NUDT3A0A1W2PQS6 291 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 STX7O15400 261 aaKnown RBP9.46□□□□□ -0.89
SIX4-202ENST00000554079 RGS5O15539 181 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 XPNPEP2O43895 674 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 CYP3A4P08684 503 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 CCNYL3P0C7X3 344 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 UMPSP11172 480 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 CD36P16671 472 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 ITGB6P18564 788 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 TPSB2P20231 275 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 MAOBP27338 520 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 HLA-DMAP28067 261 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 PER3P56645 1201 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 YBX1P67809 324 aaKnown RBP9.46□□□□□ -0.89
SIX4-202ENST00000554079 EPS8Q12929 822 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 BTN1A1Q13410 526 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 BAATQ14032 418 aaPredicted RBP9.46□□□□□ -0.89
SIX4-202ENST00000554079 DGCR6Q14129 220 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 TPSAB1Q15661 275 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 FAM98CQ17RN3 349 aaKnown RBP9.46□□□□□ -0.89
SIX4-202ENST00000554079 ZBTB41Q5SVQ8 909 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 ZNF782Q6ZMW2 699 aaPredicted RBP9.46□□□□□ -0.89
SIX4-202ENST00000554079 TMPRSS9Q7Z410 1059 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 RDH10Q8IZV5 341 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 TTLL6Q8N841 843 aa9.46□□□□□ -0.89
SIX4-202ENST00000554079 OR9I1Q8NGQ6 314 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms