RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 NPHS1O60500 1241 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 UQCRBP14927 111 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 GNPDA1P46926 289 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 SLC16A1P53985 500 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 LIPEQ05469 1076 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 SPIDRQ14159 915 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 TIFABQ6ZNK6 161 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 OR2T12Q8NG77 320 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 CYB5D2Q8WUJ1 264 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 SKA1Q96BD8 255 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 PLD4Q96BZ4 506 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 PLEKHA8Q96JA3 519 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 EBPLQ9BY08 206 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 DPP7Q9UHL4 492 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 C2orf78A6NCI8 922 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 GRM6O15303 877 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 MTPNP58546 118 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 UBE3AQ05086 875 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 FGD3Q5JSP0 725 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 GLYATQ6IB77 296 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 TMPRSS11BQ86T26 416 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 RAVER1Q8IY67 606 aaKnown RBP14.86□□□□□ -0.03
CUX1-214ENST00000550008 TSPAN14Q8NG11 270 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 FBXO27Q8NI29 283 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 CXorf40AQ8TE69 158 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 GLMNQ92990 594 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 LRTM1Q9HBL6 345 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 GIMAP4Q9NUV9 329 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 KCNE2Q9Y6J6 123 aa14.86□□□□□ -0.03
CUX1-214ENST00000550008 CCDC189A1A4V9 331 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 SLC35E2BP0CK96 405 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 SYN1P17600 705 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 GSTT1P30711 240 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 POLD2P49005 469 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 HK2P52789 917 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 GTF2H2Q13888 395 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 CGB2Q6NT52 195 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 GTF2H2CQ6P1K8 395 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 BPIFB6Q8NFQ5 453 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 NSUN5Q96P11 429 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 TRAPPC9Q96Q05 1148 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 PRKAG3Q9UGI9 489 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 PTGDR2Q9Y5Y4 395 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 XIRP1Q702N8 1843 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 TCRBV5S1A1TA0A578 114 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 ESR1P03372 595 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 MTHFD1P11586 935 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 CYP4B1P13584 511 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 EPORP19235 508 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 PTGER3P43115 390 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 AGTR2P50052 363 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 AP1S1P61966 158 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 CHRNA6Q15825 494 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 CCDC92Q53HC0 331 aaPredicted RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 CLLU1OSQ5K130 101 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 ACBD5Q5T8D3 534 aaPredicted RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 GET4Q7L5D6 327 aaPredicted RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 B4GALNT2Q8NHY0 566 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 COL26A1Q96A83 441 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 MIPEPQ99797 713 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 AARSD1Q9BTE6 412 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 ARMC7Q9H6L4 198 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 PCDHB1Q9Y5F3 818 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 TRBV23OR9-2A0A075B6M9 112 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 ILVBLA1L0T0 632 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 ANKDD1BA6NHY2 528 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 INPPL1O15357 1258 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 CST1P01037 141 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 LYNP07948 512 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 OGNP20774 298 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 IMPDH1P20839 514 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 HERVK_113P63132 956 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 ERVK-6Q9BXR3 956 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 KCTD5Q9NXV2 234 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 NDUFA13Q9P0J0 144 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 DEC1Q9P2X7 70 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 SHANK3Q9BYB0 1731 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 E7ENX8 843 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 K7ERQ8 282 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 PER2O15055 1255 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 FGBP02675 491 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 ZC3H7AQ8IWR0 971 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 CBR4Q8N4T8 237 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 OTUB1Q96FW1 271 aaPredicted RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 PAWRQ96IZ0 340 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 TCF12Q99081 682 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 MTERF1Q99551 399 aaKnown RBP14.85□□□□□ -0.03
CUX1-214ENST00000550008 TMEM248Q9NWD8 314 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 TMCC3Q9ULS5 477 aa14.85□□□□□ -0.03
CUX1-214ENST00000550008 ZNF487B1APH4 448 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 MATN2O00339 956 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 PRAMEF11O60813 436 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 DGKQP52824 942 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 CASP9P55211 416 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 LSM3P62310 102 aaKnown RBP14.84□□□□□ -0.03
CUX1-214ENST00000550008 TRIM25Q14258 630 aaKnown RBP14.84□□□□□ -0.03
CUX1-214ENST00000550008 ASZ1Q8WWH4 475 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 RHBGQ9H310 441 aa14.84□□□□□ -0.03
CUX1-214ENST00000550008 TLE6Q9H808 572 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms