RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 MT-ND3P03897 115 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 ITGA2BP08514 1039 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 TBC1D3HP0C7X1 549 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 ACRV1P26436 265 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 ETV3P41162 512 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 NSG1P42857 185 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 SERPINB8P50452 374 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 CCR5P51681 352 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 TAS2R38P59533 333 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 IRX4P78413 519 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 POU4F1Q01851 419 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 SEMG2Q02383 582 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 CTBP1Q13363 440 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 PTPRCAPQ14761 206 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 EFTUD2Q15029 972 aaKnown RBP eCLIP9.43□□□□□ -0.9
YBX3-215ENST00000544504 PTPRRQ15256 657 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 CHRNA6Q15825 494 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 HENMT1Q5T8I9 393 aaKnown RBP9.43□□□□□ -0.9
YBX3-215ENST00000544504 PMS2CLQ68D20 193 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 TBC1D3GQ6DHY5 549 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 TBC1D3CQ6IPX1 549 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 FAM45BPQ6NSW5 357 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 TIFABQ6ZNK6 161 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 ZC3HC1Q86WB0 502 aaKnown RBP9.43□□□□□ -0.9
YBX3-215ENST00000544504 SERPINA9Q86WD7 417 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 PHYKPLQ8IUZ5 450 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 DENND6AQ8IWF6 608 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 TBC1D3Q8IZP1 549 aaPredicted RBP9.43□□□□□ -0.9
YBX3-215ENST00000544504 NXPE1Q8N323 547 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 FAM45AQ8TCE6 357 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 ACMSDQ8TDX5 336 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 DCUN1D1Q96GG9 259 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 SPACA7Q96KW9 195 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 BBC3Q96PG8 261 aaPredicted RBP9.43□□□□□ -0.9
YBX3-215ENST00000544504 COPS8Q99627 209 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 GPR22Q99680 433 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 RIOK2Q9BVS4 552 aaKnown RBP9.43□□□□□ -0.9
YBX3-215ENST00000544504 TSSK1BQ9BXA7 367 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 C1QTNF2Q9BXJ5 285 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 CLPBQ9H078 707 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 ABCG8Q9H221 673 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 ZDHHC3Q9NYG2 299 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 EURLQ9NYK6 297 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 TBK1Q9UHD2 729 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 FNDC3AQ9Y2H6 1198 aaKnown RBP9.43□□□□□ -0.9
YBX3-215ENST00000544504 ATG2BQ96BY7 2078 aa9.43□□□□□ -0.9
YBX3-215ENST00000544504 SPAARA0A1B0GVQ0 90 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 A0A1W2PQU0 124 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 IGLON5A6NGN9 336 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 OR51F1A6NGY5 319 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 PATE3B3GLJ2 98 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 TRIM49D1C9J1S8 452 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 PLK4O00444 970 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 TOR1BO14657 336 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 PRMT5O14744 637 aaPredicted RBP9.42□□□□□ -0.9
YBX3-215ENST00000544504 SEMA4FO95754 770 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 MPOP05164 745 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 CD9P21926 228 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 RPS3P23396 243 aaKnown RBP eCLIP9.42□□□□□ -0.9
YBX3-215ENST00000544504 GCAP28676 217 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 CRABP2P29373 138 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 CD6P30203 668 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 SKIV2L2P42285 1042 aaKnown RBP9.42□□□□□ -0.9
YBX3-215ENST00000544504 GPR1P46091 355 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 LRRC14Q15048 493 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 ZNF423Q2M1K9 1284 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 TMEM259Q4ZIN3 620 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 USP39Q53GS9 565 aaKnown RBP9.42□□□□□ -0.9
YBX3-215ENST00000544504 RAET1GQ6H3X3 334 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 UGT3A1Q6NUS8 523 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 ADAMTSL4Q6UY14 1074 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 SLC36A4Q6YBV0 504 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 PIP4P1Q86T03 277 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 LCA5Q86VQ0 697 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 ARFGAP2Q8N6H7 521 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 GDAP1Q8TB36 358 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 FAM174AQ8TBP5 190 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 BTN2A2Q8WVV5 523 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 GLYATL1Q969I3 302 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 ERLEC1Q96DZ1 483 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 TSNARE1Q96NA8 513 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 LENG8Q96PV6 779 aaPredicted RBP9.42□□□□□ -0.9
YBX3-215ENST00000544504 SMC6Q96SB8 1091 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 MCMBPQ9BTE3 642 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 NUSAP1Q9BXS6 441 aaKnown RBP9.42□□□□□ -0.9
YBX3-215ENST00000544504 SLC17A9Q9BYT1 436 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 SLC6A17Q9H1V8 727 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 POPDC3Q9HBV1 291 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 FBXO6Q9NRD1 293 aaPredicted RBP9.42□□□□□ -0.9
YBX3-215ENST00000544504 IL1RAPL1Q9NZN1 696 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 MARCH4Q9P2E8 410 aaPredicted RBP9.42□□□□□ -0.9
YBX3-215ENST00000544504 SERGEFQ9UGK8 458 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 GNPTGQ9UJJ9 305 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 DMTF1Q9Y222 760 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 PSAT1Q9Y617 370 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 SCN8AQ9UQD0 1980 aa9.42□□□□□ -0.9
YBX3-215ENST00000544504 ADAMTS20P59510 1910 aa9.41□□□□□ -0.9
YBX3-215ENST00000544504 IGLV3-16A0A075B6K0 115 aa9.41□□□□□ -0.9
YBX3-215ENST00000544504 A0A0U1RQS6 177 aa9.41□□□□□ -0.9
YBX3-215ENST00000544504 FAM95CA0A1B0GW59 222 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms