RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 EMID1Q96A84 441 aaPredicted RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 NUS1Q96E22 293 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 NECTIN4Q96NY8 510 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 PANX1Q96RD7 426 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TCF12Q99081 682 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 CNPPD1Q9BV87 410 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 PRRG4Q9BZD6 226 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ATG10Q9H0Y0 220 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 POLR1BQ9H9Y6 1135 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 DNAJB4Q9UDY4 337 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 FKBPLQ9UIM3 349 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 HEBP2Q9Y5Z4 205 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 FAM237BA0A1B0GVD1 139 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 KERAO60938 352 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 LDLRP01130 860 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 HNRNPA1P09651 372 aaKnown RBP eCLIP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ZNF24P17028 368 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ME2P23368 584 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 PTPN4P29074 926 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 MAGEA11P43364 429 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 MASP1P48740 699 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ATXN1P54253 815 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 KLC1Q07866 573 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SCRN3Q0VDG4 424 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 XKR4Q5GH76 650 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 WDR45BQ5MNZ6 344 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 C9orf64Q5T6V5 341 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SNX30Q5VWJ9 437 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TRIM40Q6P9F5 258 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 MACC1Q6ZN28 852 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ZNF280BQ86YH2 543 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ZC3H7AQ8IWR0 971 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 OR2AP1Q8NGE2 309 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 NELL1Q92832 810 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 OTUB2Q96DC9 234 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 C12orf66Q96MD2 445 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ZNF599Q96NL3 588 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 OR2AG1Q9H205 316 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SUCOQ9UBS9 1254 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 LEF1Q9UJU2 399 aaPredicted RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 RAB21Q9UL25 225 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 DUSP12Q9UNI6 340 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 IQCF5A8MTL0 148 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 HDAC3O15379 428 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ZNF623O75123 536 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 COQ9O75208 318 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SNX4O95219 450 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 RB1P06400 928 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 C2P06681 752 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ITPKBP27987 946 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 MANFP55145 182 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 PTP4A2Q12974 167 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SEMA5AQ13591 1074 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 LY6G5CQ5SRR4 150 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 OTUD3Q5T2D3 398 aaPredicted RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 CYB5D1Q6P9G0 228 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 BRAT1Q6PJG6 821 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 Q6ZVU0 165 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ARCQ7LC44 396 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ZNF248Q8NDW4 579 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ZNF516Q92618 1163 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TEKT5Q96M29 485 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 PRICKLE1Q96MT3 831 aaPredicted RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 PWWP2AQ96N64 755 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 CAB39LQ9H9S4 337 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 RXFP1Q9HBX9 757 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 KCNK4Q9NYG8 393 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ABI3Q9P2A4 366 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 VPS4AQ9UN37 437 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 R3HDM2Q9Y2K5 976 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 RAP2CQ9Y3L5 183 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 H3BQF6 201 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 CCL22O00626 93 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TXNL1O43396 289 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SCN2BO60939 215 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 NPPAP01160 153 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ESR1P03372 595 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 RHOP08100 348 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 HNRNPLP14866 589 aaKnown RBP eCLIP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 EDNRBP24530 442 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 GNPDA1P46926 289 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SUZ12Q15022 739 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TAF13Q15543 124 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TRMT5Q32P41 509 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TSTD2Q5T7W7 516 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 ANXA8L1Q5VT79 327 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 TYW3Q6IPR3 259 aaKnown RBP6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 RNF19BQ6ZMZ0 732 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 HEATR4Q86WZ0 1026 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 CAMK1DQ8IU85 385 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 LMAN2LQ9H0V9 348 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 REEP1Q9H902 201 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SEMA3GQ9NS98 782 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 EXD2Q9NVH0 621 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 MIOSQ9NXC5 875 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 SLC9A8Q9Y2E8 581 aa6.84□□□□□ -1.31
SRGAP1-206ENST00000543397 A0A0U1RQJ8 604 aa6.83□□□□□ -1.32
SRGAP1-206ENST00000543397 ATP6AP2A0A1C7CYW4 349 aa6.83□□□□□ -1.32
SRGAP1-206ENST00000543397 FFAR2O15552 330 aa6.83□□□□□ -1.32
SRGAP1-206ENST00000543397 ATP6AP2O75787 350 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms