RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 GDAP1L1Q96MZ0 367 aa12.42□□□□□ -0.42
CLSTN3-208ENST00000538933 RBM15Q96T37 977 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLSTN3-208ENST00000538933 TM6SF2Q9BZW4 377 aa12.42□□□□□ -0.42
CLSTN3-208ENST00000538933 DPH5Q9H2P9 285 aa12.42□□□□□ -0.42
CLSTN3-208ENST00000538933 RAB6BQ9NRW1 208 aa12.42□□□□□ -0.42
CLSTN3-208ENST00000538933 B3GALT1Q9Y5Z6 326 aa12.42□□□□□ -0.42
CLSTN3-208ENST00000538933 A1L4Q6 167 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 CAPN5O15484 640 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 CD160O95971 181 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 CTSEP14091 401 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 NFKB1P19838 968 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 NR1D1P20393 614 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 PSMB4P28070 264 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 TNFRSF8P28908 595 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 OAS2P29728 719 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 GKP32189 559 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 RPL22P35268 128 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 SCNN1BP51168 640 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 MAXP61244 160 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 SNRPD1P62314 119 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 GUCY2DQ02846 1103 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 RAD51Q06609 339 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 WASHC5Q12768 1159 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 HLTFQ14527 1009 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 CYTH1Q15438 398 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 PARP6Q2NL67 630 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 PCGF5Q86SE9 256 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 GKN2Q86XP6 184 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 TEX26Q8N6G2 289 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 PCDH20Q8N6Y1 951 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 TSEN2Q8NCE0 465 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 GALNT11Q8NCW6 608 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 BBOF1Q8ND07 529 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 SNF8Q96H20 258 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 EXOC2Q96KP1 924 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 PSKH2Q96QS6 385 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 CEP44Q9C0F1 390 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 GBA3Q9H227 469 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 RDH14Q9HBH5 336 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 GLOD4Q9HC38 313 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 CUEDC1Q9NWM3 386 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 LRIT1Q9P2V4 623 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 PILRAQ9UKJ1 303 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 TP53TG5Q9Y2B4 290 aa12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 AAR2Q9Y312 384 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-208ENST00000538933 ZNF106Q9H2Y7 1883 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 TNRC6AQ8NDV7 1962 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 IGHV5-10-1A0A0J9YXX1 117 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 HGSO14964 777 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 PSMD3O43242 534 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 MMP20O60882 483 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 ANXA9O76027 345 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 RASGRP1O95267 797 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 CPNE6O95741 557 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 PEX11BO96011 259 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 ITIH2P19823 946 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 CA4P22748 312 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 CES1P23141 567 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 ELAVL4P26378 380 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 GEMP55040 296 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 SRP54P61011 504 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 CDC20Q12834 499 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 C14orf28Q4W4Y0 310 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 ZNF805Q5CZA5 627 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 FAM182AQ5T1J6 154 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 CFAP58Q5T655 872 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 IZUMO3Q5VZ72 239 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 RD3Q7Z3Z2 195 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 PIM3Q86V86 326 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 PLPP6Q8IY26 295 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 IFT20Q8IY31 132 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 GLIS1Q8NBF1 620 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 RCBTB1Q8NDN9 531 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 ISG20Q96AZ6 181 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 MGME1Q9BQP7 344 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 ERP44Q9BS26 406 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 DDA1Q9BW61 102 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 FSD1LQ9BXM9 530 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 SLC25A51Q9H1U9 297 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 FAM114A2Q9NRY5 505 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 ATP8A1Q9Y2Q0 1164 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 SNX24Q9Y343 169 aa12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 V9GYY5 206 aaPredicted RBP12.4□□□□□ -0.42
CLSTN3-208ENST00000538933 LOC101059948A0A1B0GTJ6 334 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 NEMP1O14524 444 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 DNALI1O14645 258 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 INSIG1O15503 277 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 NUDT21O43809 227 aaKnown RBP12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 RAD1O60671 282 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 CLDN1O95832 211 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 GSRP00390 522 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 PRKAR1AP10644 381 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 CD86P42081 329 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 SARNPP82979 210 aaKnown RBP12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 DSC2Q02487 901 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 IRF4Q15306 451 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 KCTD19Q17RG1 926 aaPredicted RBP12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 DEFB109BQ30KR1 87 aa12.39□□□□□ -0.43
CLSTN3-208ENST00000538933 ATXN7L2Q5T6C5 722 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms