RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ZNF7P17097 686 aaPredicted RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 ABCG1P45844 678 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 PCBP4P57723 403 aaKnown RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 HHEXQ03014 270 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 CFHR1Q03591 330 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 EIF3IQ13347 325 aaKnown RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 SQSTM1Q13501 440 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 ITGA9Q13797 1035 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 RPS6KA1Q15418 735 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 OASLQ15646 514 aaKnown RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 CLPPQ16740 277 aaPredicted RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 INSCQ1MX18 579 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 GPRC6AQ5T6X5 926 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 LRRC69Q6ZNQ3 347 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 C11orf96Q7Z7L8 435 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 PIM3Q86V86 326 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 FBXO39Q8N4B4 442 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 ZNF248Q8NDW4 579 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 DDHD1Q8NEL9 900 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 RTP4Q96DX8 246 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 CRELD1Q96HD1 420 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 NAF1Q96HR8 494 aaKnown RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 TIMM29Q9BSF4 260 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 OSGEPL1Q9H4B0 414 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 SARS2Q9NP81 518 aaKnown RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 SMOXQ9NWM0 555 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 KCNK4Q9NYG8 393 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 SCHIP1Q9P0W5 487 aaPredicted RBP14.58□□□□□ -0.08
USP28-204ENST00000537642 FKBPLQ9UIM3 349 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 DNAJC16Q9Y2G8 782 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 BPTFQ12830 3046 aa14.58□□□□□ -0.08
USP28-204ENST00000537642 KIR2DS5A0A0G2JLQ3 304 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 A0A0G2JNG1 304 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 IGHV5-10-1A0A0J9YXX1 117 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 KIR2DS3K7RE56 304 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 AGRPO00253 132 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 PRAMEF1O95521 474 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 CRTAMO95727 393 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 ITGA2BP08514 1039 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 HOXB3P14651 431 aaPredicted RBP14.57□□□□□ -0.08
USP28-204ENST00000537642 SLC2A4P14672 509 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 CSF2RBP32927 897 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 MLLT3P42568 568 aaPredicted RBP14.57□□□□□ -0.08
USP28-204ENST00000537642 ZNF140P52738 457 aaPredicted RBP14.57□□□□□ -0.08
USP28-204ENST00000537642 CTSCP53634 463 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 UBE2IP63279 158 aaKnown RBP14.57□□□□□ -0.08
USP28-204ENST00000537642 XIAPP98170 497 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 NFATC2Q13469 925 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 GTF2H3Q13889 308 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 KIR2DS5Q14953 304 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 C16orf72Q14CZ0 275 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 LDLRAP1Q5SW96 308 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 PHF19Q5T6S3 580 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 CLEC14AQ86T13 490 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 SLC9B2Q86UD5 537 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 TRAPPC5Q8IUR0 188 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 SPACA3Q8IXA5 215 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 TAB3Q8N5C8 712 aaPredicted RBP14.57□□□□□ -0.08
USP28-204ENST00000537642 RASGEF1AQ8N9B8 481 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 OR13C4Q8NGS5 318 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 ZNF398Q8TD17 642 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 ALS2CR12Q96Q35 445 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 SLC38A3Q99624 504 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 FRMD8P1Q9BZ68 369 aaPredicted RBP14.57□□□□□ -0.08
USP28-204ENST00000537642 CPNE7Q9UBL6 633 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 FEZ2Q9UHY8 353 aaPredicted RBP14.57□□□□□ -0.08
USP28-204ENST00000537642 LOXL2Q9Y4K0 774 aa14.57□□□□□ -0.08
USP28-204ENST00000537642 ITPR1Q14643 2758 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 AHCTF1Q8WYP5 2266 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 OR5K4A6NMS3 321 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 LDB2O43679 373 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 SRP72O76094 671 aaKnown RBP14.56□□□□□ -0.08
USP28-204ENST00000537642 AP2A1O95782 977 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 ITIH1P19827 911 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 STIP1P31948 543 aaKnown RBP14.56□□□□□ -0.08
USP28-204ENST00000537642 LIMK2P53671 638 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 GPLD1P80108 840 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 TLE3Q04726 772 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 SIX1Q15475 284 aaPredicted RBP14.56□□□□□ -0.08
USP28-204ENST00000537642 P3H1Q32P28 736 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 PDZD3Q86UT5 571 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 OR4D9Q8NGE8 314 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 C1orf54Q8WWF1 131 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 TMEM159Q96B96 161 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 LRRC45Q96CN5 670 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 CCDC74BQ96LY2 380 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 TTC25Q96NG3 672 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 ZCCHC2Q9C0B9 1178 aaKnown RBP14.56□□□□□ -0.08
USP28-204ENST00000537642 LRRC40Q9H9A6 602 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 TMEM9Q9P0T7 183 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 PISDQ9UG56 409 aa14.56□□□□□ -0.08
USP28-204ENST00000537642 NBEAQ8NFP9 2946 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 PDZK1P1A8MUH7 402 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 CCL22O00626 93 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 PSMD3O43242 534 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 JMJD7P0C870 316 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 BRAFP15056 766 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 TPH1P17752 444 aa14.55□□□□□ -0.08
USP28-204ENST00000537642 XRCC1P18887 633 aaPredicted RBP14.55□□□□□ -0.08
USP28-204ENST00000537642 RPL10P27635 214 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms