RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CCR3P51677 355 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 E2F2Q14209 437 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 ZACNQ401N2 412 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 LCN1P1Q5VSP4 162 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 DCLRE1AQ6PJP8 1040 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 CMC1Q7Z7K0 106 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 LAPTM4BQ86VI4 370 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 CRYBG2Q8N1P7 616 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 SPATA6LQ8N4H0 392 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 UBR7Q8N806 425 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 C11orf65Q8NCR3 313 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 LNX1Q8TBB1 728 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-209ENST00000537178 PIK3R3Q92569 461 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 MYO19Q96H55 970 aa10.57□□□□□ -0.72
CLIP1-209ENST00000537178 FCRL2Q96LA5 508 aaPredicted RBP10.57□□□□□ -0.72
CLIP1-209ENST00000537178 H3BM21 787 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 SCAMP3O14828 347 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 KERAO60938 352 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CLDN11O75508 207 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CYB5AP00167 134 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 UROSP10746 265 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ETS2P15036 469 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 AQP1P29972 269 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 MTHFRP42898 656 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ZNF132P52740 706 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 EIF5AP63241 154 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 SMU1Q2TAY7 513 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 GCNT6Q5T4J0 391 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 EGFLAMQ63HQ2 1017 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ZCCHC12Q6PEW1 402 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ZNF572Q7Z3I7 529 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TMEM161BQ8NDZ6 487 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 DNASE1L2Q92874 299 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 P2RY11Q96G91 374 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 MFSD14AQ96MC6 490 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 PPM1MQ96MI6 270 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 PURBQ96QR8 312 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 PLEKHA1Q9HB21 404 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 NEUROD4Q9HD90 331 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ZNF490Q9ULM2 529 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 PEX16Q9Y5Y5 336 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ELOVL7A1L3X0 281 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TNFRSF11BO00300 401 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 IPO13O94829 963 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ANGPTL1O95841 491 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ADH1CP00326 375 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 POLR2JP52435 117 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 PPP3R1P63098 170 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 VPS26BQ4G0F5 336 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 DCST1Q5T197 706 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 QSOX2Q6ZRP7 698 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 FIBCD1Q8N539 461 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TMEM165Q9HC07 324 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 SMPD3Q9NY59 655 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CALML5Q9NZT1 146 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CLEC4AQ9UMR7 237 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 DDX60LQ5H9U9 1706 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ADAMDEC1O15204 470 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 MAFO75444 373 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TRMUO75648 421 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ASLP04424 464 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CD2P06729 351 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 NELFEP18615 380 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TSPAN5P62079 268 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 BEX3Q00994 111 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 NRG1Q02297 640 aaPredicted RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 SMARCB1Q12824 385 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 DLG1Q12959 904 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 SF1Q15637 639 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ARMCX6Q7L4S7 300 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 STRADAQ7RTN6 431 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 KCNS3Q9BQ31 491 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 BRINP2Q9C0B6 783 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TTYH3Q9C0H2 523 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 S100A14Q9HCY8 104 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CDH7Q9ULB5 785 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 SNX7Q9UNH6 387 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CLDN4O14493 209 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 RPP40O75818 363 aaKnown RBP10.56□□□□□ -0.72
CLIP1-209ENST00000537178 IDSP22304 550 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 MASP1P48740 699 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CYP4F8P98187 520 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 DDR1Q08345 913 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CXCL17Q6UXB2 119 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 FRRS1Q6ZNA5 592 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 PRR23CQ6ZRP0 262 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 RIOX2Q8IUF8 465 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 SLC43A3Q8NBI5 491 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 PHF12Q96QT6 1004 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 CIB1Q99828 191 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TAPBPLQ9BX59 468 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 ACP6Q9NPH0 428 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 EQTNQ9NQ60 294 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 TRIM17Q9Y577 477 aa10.56□□□□□ -0.72
CLIP1-209ENST00000537178 KIF13BQ9NQT8 1826 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 ATG13O75143 517 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 BANF1O75531 89 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CDK14O94921 469 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 FABP3P05413 133 aa10.55□□□□□ -0.72
CLIP1-209ENST00000537178 CLUP10909 449 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms