RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 EPHA4P54764 986 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 TMEM115Q12893 351 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-211ENST00000533492 NOMO1Q15155 1222 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 SLC1A5Q15758 541 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 ATP13A5Q4VNC0 1218 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 ITPRIPL1Q6GPH6 555 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 WDR74Q6RFH5 385 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-211ENST00000533492 PCSK4Q6UW60 755 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 GLT6D1Q7Z4J2 308 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 ZSCAN1Q8NBB4 408 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 BRSK1Q8TDC3 778 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 ART4Q93070 314 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 OXNAD1Q96HP4 312 aaPredicted RBP15.23■□□□□ 0.03
CPSF1-211ENST00000533492 VPS35Q96QK1 796 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 ASPSCR1Q9BZE9 553 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 EPB41L1Q9H4G0 881 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 PDP2Q9P2J9 529 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 SLC23A2Q9UGH3 650 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 PKP3Q9Y446 797 aa15.23■□□□□ 0.03
CPSF1-211ENST00000533492 CCDC66A2RUB6 948 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 RCCD1A6NED2 376 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 ANXA9O76027 345 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 VIPP01282 170 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 VCLP18206 1134 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 IDSP22304 550 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 SPAM1P38567 509 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 GEMP55040 296 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 RWDD2BP57060 319 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 OTUD4Q01804 1114 aaKnown RBP15.22■□□□□ 0.03
CPSF1-211ENST00000533492 SEPT7Q16181 437 aaKnown RBP15.22■□□□□ 0.03
CPSF1-211ENST00000533492 KIAA1328Q86T90 577 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 TRAPPC5Q8IUR0 188 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 TTC30BQ8N4P2 665 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 ACTL9Q8TC94 416 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 JPH3Q8WXH2 748 aaPredicted RBP15.22■□□□□ 0.03
CPSF1-211ENST00000533492 TTC9Q92623 222 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 SGF29Q96ES7 293 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 TIMM29Q9BSF4 260 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 TBC1D10AQ9BXI6 508 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 OSBPL8Q9BZF1 889 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 C10orf88Q9H8K7 445 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 IL26Q9NPH9 171 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 OCIAD1Q9NX40 245 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 IL17CQ9P0M4 197 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 KLHL3Q9UH77 587 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 EFR3BQ9Y2G0 817 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 PCDHGA3Q9Y5H0 932 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 DUSP10Q9Y6W6 482 aa15.22■□□□□ 0.03
CPSF1-211ENST00000533492 SMG1Q96Q15 3661 aaKnown RBP15.22■□□□□ 0.03
CPSF1-211ENST00000533492 GLYATL1P3A0A0U1RQE8 302 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 BTNL10A8MVZ5 291 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 B4E171 279 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 STX7O15400 261 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 BUD23O43709 281 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 C1QL1O75973 258 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 STK10O94804 968 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 PTMAP06454 111 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 AMD1P17707 334 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 XRCC1P18887 633 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 RPL10P27635 214 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 TSPAN7P41732 249 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 ATP1A2P50993 1020 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 RAB15P59190 212 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 EIF3EP60228 445 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 SRSF6Q13247 344 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 PRPSAP1Q14558 356 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 CHRNA6Q15825 494 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 DCAF12Q5T6F0 453 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 DARS2Q6PI48 645 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 FAM151BQ6UXP7 276 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 VASH2Q86V25 355 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 DTX1Q86Y01 620 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 PLXDC1Q8IUK5 500 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 CDKL3Q8IVW4 592 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 DTX3LQ8TDB6 740 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 DDA1Q9BW61 102 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 ZCCHC2Q9C0B9 1178 aaKnown RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 GBA3Q9H227 469 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 SCHIP1Q9P0W5 487 aaPredicted RBP15.21■□□□□ 0.03
CPSF1-211ENST00000533492 TMPRSS11EQ9UL52 423 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 B3GALT1Q9Y5Z6 326 aa15.21■□□□□ 0.03
CPSF1-211ENST00000533492 LILRA5A6NI73 299 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.2■□□□□ 0.02
CPSF1-211ENST00000533492 UGT1A9O60656 530 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 PPFIA2O75334 1257 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 TJP3O95049 919 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 AGTP01019 485 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 RBP3P10745 1247 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 UGT1A6P19224 532 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 UGT1A1P22309 533 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 UGT1A4P22310 534 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 FECHP22830 423 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 UGT1A3P35503 534 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 SLC19A1P41440 591 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 VAV2P52735 878 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 UBE2IP63279 158 aaKnown RBP15.2■□□□□ 0.02
CPSF1-211ENST00000533492 ITGA9Q13797 1035 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 LY6DQ14210 128 aa15.2■□□□□ 0.02
CPSF1-211ENST00000533492 KHDC1Q4VXA5 237 aaKnown RBP15.2■□□□□ 0.02
CPSF1-211ENST00000533492 LDLRAP1Q5SW96 308 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms