RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CASP2P42575 452 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 HK3P52790 923 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 RING1Q06587 406 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 CYBRD1Q53TN4 286 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 NANOGP8Q6NSW7 305 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 RTN4RL1Q86UN2 441 aaPredicted RBP19.08■□□□□ 0.64
VPS28-213ENST00000530983 GPR180Q86V85 440 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 OFCC1Q8IZS5 231 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 BBS5Q8N3I7 341 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 OR7D4Q8NG98 312 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 HGH1Q9BTY7 390 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 RPF2Q9H7B2 306 aaKnown RBP19.08■□□□□ 0.64
VPS28-213ENST00000530983 CCSER2Q9H7U1 834 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 NANOGQ9H9S0 305 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 SMPD3Q9NY59 655 aaPredicted RBP19.08■□□□□ 0.64
VPS28-213ENST00000530983 FADS3Q9Y5Q0 445 aa19.08■□□□□ 0.64
VPS28-213ENST00000530983 MLYCDO95822 493 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 CHEK2O96017 543 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 MT-ND1P03886 318 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 STT3AP46977 705 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 EEFSECP57772 596 aaKnown RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 ERVK-8P63133 956 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 RBBP7Q16576 425 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 PDCD4Q53EL6 469 aaKnown RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 PYCR3Q53H96 274 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 PIANPQ8IYJ0 282 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 LGI2Q8N0V4 545 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 NKAPQ8N5F7 415 aaKnown RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 RMDN1Q96DB5 314 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 EXOC2Q96KP1 924 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 NPLQ9BXD5 320 aaPredicted RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 CDC14AQ9UNH5 594 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 SLC27A5Q9Y2P5 690 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 TYW5A2RUC4 315 aaKnown RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 PRLP01236 227 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 HRH2P25021 359 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 CAPGP40121 348 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 KCNQ1P51787 676 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 TAF1AQ15573 450 aaPredicted RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 FXNQ16595 210 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 CTXN3Q4LDR2 81 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 PSAPL1Q6NUJ1 521 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 TXNDC11Q6PKC3 985 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 EFL1Q7Z2Z2 1120 aaKnown RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 TBC1D21Q8IYX1 336 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 DCBLD1Q8N8Z6 715 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 SIDT2Q8NBJ9 832 aaKnown RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 PROKR1Q8TCW9 393 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 C12orf43Q96C57 262 aaKnown RBP19.07■□□□□ 0.64
VPS28-213ENST00000530983 PSKH2Q96QS6 385 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 SEZ6LQ9BYH1 1024 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 SPC25Q9HBM1 224 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 TMEM165Q9HC07 324 aa19.07■□□□□ 0.64
VPS28-213ENST00000530983 ZNF701M0R085 212 aaPredicted RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 E2F3O00716 465 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 OR1I1O60431 355 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 ADAMTS4O75173 837 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 NIPSNAP2O75323 286 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 UMPSP11172 480 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 SLC6A4P31645 630 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 MAGEA10P43363 369 aaPredicted RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 RPS9P46781 194 aaKnown RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 C6orf136Q5SQH8 315 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 ABRAXAS1Q6UWZ7 409 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 PATL1Q86TB9 770 aaKnown RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 DHRSXQ8N5I4 330 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 MAGEE2Q8TD90 523 aaPredicted RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 CRISPLD1Q9H336 500 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 SOX17Q9H6I2 414 aaPredicted RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 TRMT13Q9NUP7 481 aaKnown RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 SEPT3Q9UH03 358 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 EIF2B4Q9UI10 523 aaKnown RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 ZNF639Q9UID6 485 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 F5H5T6 163 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 SNAP29O95721 258 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 PSMA3P25788 255 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 HUNKP57058 714 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 NAA20P61599 178 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 GNA12Q03113 381 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 TRIM71Q2Q1W2 868 aaKnown RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 CTSL3PQ5NE16 218 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 GPRIN3Q6ZVF9 776 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 OR56A4Q8NGH8 313 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 EEF1AKMT1Q8WVE0 214 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 TRIB2Q92519 343 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 ISG20Q96AZ6 181 aaKnown RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 BIRC7Q96CA5 298 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 B3GALT6Q96L58 329 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 PIF1Q9H611 641 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 FAIMQ9NVQ4 179 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 ZIM2Q9NZV7 527 aa19.06■□□□□ 0.64
VPS28-213ENST00000530983 FAF1Q9UNN5 650 aaPredicted RBP19.06■□□□□ 0.64
VPS28-213ENST00000530983 KANSL1LA0AUZ9 987 aa19.05■□□□□ 0.64
VPS28-213ENST00000530983 FAM234BA2RU67 622 aa19.05■□□□□ 0.64
VPS28-213ENST00000530983 SNAP91O60641 907 aa19.05■□□□□ 0.64
VPS28-213ENST00000530983 OR4F21O95013 312 aa19.05■□□□□ 0.64
VPS28-213ENST00000530983 LDLRP01130 860 aa19.05■□□□□ 0.64
VPS28-213ENST00000530983 ENO2P09104 434 aaPredicted RBP19.05■□□□□ 0.64
VPS28-213ENST00000530983 HTR1EP28566 365 aa19.05■□□□□ 0.64
VPS28-213ENST00000530983 ARPP19P56211 112 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms