RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CROCCP2Q86T23 111 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 TSTD1Q8NFU3 115 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 OR13J1Q8NGT2 312 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 GPR150Q8NGU9 434 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 OR4L1Q8NH43 312 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 CALML6Q8TD86 181 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 GPBAR1Q8TDU6 330 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 HDAC10Q969S8 669 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 MFSD3Q96ES6 412 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 FAM46AQ96IP4 442 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 TBATAQ96M53 351 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 ZNF778Q96MU6 729 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PLEKHG4BQ96PX9 1271 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 CYTH2Q99418 400 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 SPOCK3Q9BQ16 436 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 WDR83Q9BRX9 315 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 TMEM109Q9BVC6 243 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 FAM83DQ9H4H8 585 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 VIPAS39Q9H9C1 493 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PLAC1Q9HBJ0 212 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PREBQ9HCU5 417 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PIH1D1Q9NWS0 290 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 NSMCE4AQ9NXX6 385 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 PKD2L2Q9NZM6 624 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 USP36Q9P275 1121 aaKnown RBP7.36□□□□□ -1.23
CD44-228ENST00000528455 B4GALT6Q9UBX8 382 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 CHMP2BQ9UQN3 213 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 ARL5AQ9Y689 179 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 SPTBN4Q9H254 2564 aa7.36□□□□□ -1.23
CD44-228ENST00000528455 GVINP1Q7Z2Y8 2422 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3DA0A087WVF3 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3IA0A087WXS9 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3EA0A087X179 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3KA0A087X1G2 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TCRBV9S1A1TA0A576 114 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3FA6NER0 549 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 LRRC72A6NJI9 287 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 FAM159BA6NKW6 160 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 A8MX80 341 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 C10orf142B7Z368 130 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3LB9A6J9 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 NEMP1O14524 444 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 WNT9AO14904 365 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 PFDN6O15212 129 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 BANF1O75531 89 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 RPP40O75818 363 aaKnown RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 TM7SF2O76062 418 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 PCDH8O95206 1070 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 VAPBO95292 243 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 C1QAP02745 245 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 ELFN1P0C7U0 828 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3HP0C7X1 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TDGF1P13385 188 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 BPIP17213 487 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 LHCGRP22888 699 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 STX2P32856 288 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 CNR2P34972 360 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 NUDT1P36639 197 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 PREPP48147 710 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 ZNF140P52738 457 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 METAP1P53582 386 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 DCDC1P59894 354 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 PRAMEP78395 509 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 XIAPP98170 497 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 MGAT5Q09328 741 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 RALGDSQ12967 914 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 SGCGQ13326 291 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 MTM1Q13496 603 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 NAB1Q13506 487 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 CASP8Q14790 479 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 CRYMQ14894 314 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 RASA2Q15283 850 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 UAP1Q16222 522 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 POM121L1PQ3SYA9 428 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 GPR33Q49SQ1 333 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TEDDM1Q5T9Z0 273 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 LGSNQ5TDP6 509 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 LYPLAL1Q5VWZ2 237 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 LRRC66Q68CR7 880 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3GQ6DHY5 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3CQ6IPX1 549 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 KIAA1161Q6NSJ0 714 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 NEPROQ6NW34 567 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 FDX2Q6P4F2 183 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 FBXO38Q6PIJ6 1188 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 CES3Q6UWW8 571 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 LRIG3Q6UXM1 1119 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 CERS6Q6ZMG9 384 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 Q6ZVL8 140 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 ZNF765Q7L2R6 523 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 GALNT7Q86SF2 657 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 SDCCAG8Q86SQ7 713 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 TSPAN33Q86UF1 283 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 SLC26A11Q86WA9 606 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 LRRC6Q86X45 466 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 GSPT2Q8IYD1 628 aaKnown RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 TBC1D3Q8IZP1 549 aaPredicted RBP7.35□□□□□ -1.23
CD44-228ENST00000528455 SUMF1Q8NBK3 374 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 OR13C4Q8NGS5 318 aa7.35□□□□□ -1.23
CD44-228ENST00000528455 OR6P1Q8NGX9 317 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms