RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 BARD1Q99728 777 aaKnown RBP4.49□□□□□ -1.69
CD44-223ENST00000526553 TMEM39BQ9GZU3 492 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 CCDC68Q9H2F9 335 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 HCFC1R1Q9NWW0 138 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 MTMR10Q9NXD2 777 aa4.49□□□□□ -1.69
CD44-223ENST00000526553 A6NCN8 305 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 OR5K3A6NET4 321 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 A8MZ25 164 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 TCERG1O14776 1098 aaKnown RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 EIF3DO15371 548 aaKnown RBP eCLIP4.48□□□□□ -1.69
CD44-223ENST00000526553 BUD23O43709 281 aaKnown RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 GFPT2O94808 682 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 AHRP35869 848 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 ARL3P36405 182 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 AMPHP49418 695 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 DRG2P55039 364 aaKnown RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 SETQ01105 290 aaPredicted RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 CDC16Q13042 620 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 EIF4A2Q14240 407 aaKnown RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 TOMM20Q15388 145 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 SIRPB2Q5JXA9 342 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 CCNYL2Q5T2Q4 361 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 SNX30Q5VWJ9 437 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 ACSM2BQ68CK6 577 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 FAM171BQ6P995 826 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 GSG1LQ6UXU4 331 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 RPAP2Q8IXW5 612 aaPredicted RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 PM20D2Q8IYS1 436 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 SLC38A9Q8NBW4 561 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 SLC24A4Q8NFF2 622 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 HM13Q8TCT9 377 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 UTP15Q8TED0 518 aaKnown RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 ERP27Q96DN0 273 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 SCRN2Q96FV2 425 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 RSRC1Q96IZ7 334 aaKnown RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 POLR3CQ9BUI4 534 aaPredicted RBP4.48□□□□□ -1.69
CD44-223ENST00000526553 EPB41L5Q9HCM4 733 aa4.48□□□□□ -1.69
CD44-223ENST00000526553 FAM72CH0Y354 149 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 DVL1O14640 695 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 SYNGR3O43761 229 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 SLC22A3O75751 556 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 IGHV4-39P01824 125 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 HIST1H2ABP04908 130 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 ACTN1P12814 892 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 TMEM11P17152 192 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 ALOX12P18054 663 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 HIST1H2ADP20671 130 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 TCEA1P23193 301 aaKnown RBP4.47□□□□□ -1.69
CD44-223ENST00000526553 ACADLP28330 430 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 DVL1P1P54792 670 aaPredicted RBP4.47□□□□□ -1.69
CD44-223ENST00000526553 GALCP54803 685 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 PRAMEP78395 509 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 COG7P83436 770 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 RPL24P83731 157 aaKnown RBP4.47□□□□□ -1.69
CD44-223ENST00000526553 MAMLD1Q13495 774 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 MEA1Q16626 185 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 FAM72AQ5TYM5 149 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 JADE1Q6IE81 842 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 FAM72DQ6L9T8 149 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 TMEM154Q6P9G4 183 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 Q75L30 129 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 HIST3H2AQ7L7L0 130 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 FAM72BQ86X60 149 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 OR8K5Q8NH50 307 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 OR52I2Q8NH67 350 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 LRRC8CQ8TDW0 803 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 PHF21AQ96BD5 680 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 LINGO1Q96FE5 620 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 PGLYRP2Q96PD5 576 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 SERINC2Q96SA4 455 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 ITPAQ9BY32 194 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 LRMDAQ9H2I8 198 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 TCP11L1Q9NUJ3 509 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 MARCH4Q9P2E8 410 aaPredicted RBP4.47□□□□□ -1.69
CD44-223ENST00000526553 GPR34Q9UPC5 381 aa4.47□□□□□ -1.69
CD44-223ENST00000526553 R3HDM2Q9Y2K5 976 aaKnown RBP4.47□□□□□ -1.69
CD44-223ENST00000526553 ARHGEF40Q8TER5 1519 aa4.46□□□□□ -1.69
CD44-223ENST00000526553 PRR23AA6NEV1 266 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 ANKRD66B4E2M5 251 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 SMAD9O15198 467 aaKnown RBP4.46□□□□□ -1.7
CD44-223ENST00000526553 TMCC2O75069 709 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 KCNK5O95279 499 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 ACADMP11310 421 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 GM2AP17900 193 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 TIMP3P35625 211 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 ARCN1P48444 511 aaKnown RBP4.46□□□□□ -1.7
CD44-223ENST00000526553 DMP1Q13316 513 aaPredicted RBP4.46□□□□□ -1.7
CD44-223ENST00000526553 RAB6CQ53S08 254 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 GKAP1Q5VSY0 366 aaPredicted RBP4.46□□□□□ -1.7
CD44-223ENST00000526553 FAM205BPQ63HN1 556 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 PMS2CLQ68D20 193 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 KLHL35Q6PF15 583 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 C16orf54Q6UWD8 224 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 RAD9BQ6WBX8 426 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 SLC26A9Q7LBE3 791 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 TICAM1Q8IUC6 712 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 GCSAMQ8N6F7 178 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 EMC1Q8N766 993 aa4.46□□□□□ -1.7
CD44-223ENST00000526553 ZKSCAN4Q969J2 545 aaPredicted RBP4.46□□□□□ -1.7
CD44-223ENST00000526553 NCAPGQ9BPX3 1015 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms