RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 PPHLN1Q8NEY8 458 aaKnown RBP4.63□□□□□ -1.67
USP48-211ENST00000526044 SUN3Q8TAQ9 357 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 LNX1Q8TBB1 728 aaPredicted RBP4.63□□□□□ -1.67
USP48-211ENST00000526044 SPPL3Q8TCT6 385 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 POF1BQ8WVV4 589 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 SHC3Q92529 594 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 SYN2Q92777 582 aaPredicted RBP4.63□□□□□ -1.67
USP48-211ENST00000526044 SKA1Q96BD8 255 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 RITA1Q96K30 269 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 ACBD6Q9BR61 282 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 HERPUD2Q9BSE4 406 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 CENPOQ9BU64 300 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 ELOVL4Q9GZR5 314 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 PDCL3Q9H2J4 239 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 PRO3102Q9H379 93 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 SMYD3Q9H7B4 428 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 CERS4Q9HA82 394 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 MRPL17Q9NRX2 175 aaKnown RBP4.63□□□□□ -1.67
USP48-211ENST00000526044 ASIC5Q9NY37 505 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 CDH9Q9ULB4 789 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 MTUS1Q9ULD2 1270 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 CNTN6Q9UQ52 1028 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 PCDHGB3Q9Y5G1 929 aa4.63□□□□□ -1.67
USP48-211ENST00000526044 BZW2Q9Y6E2 419 aaKnown RBP4.63□□□□□ -1.67
USP48-211ENST00000526044 PLXNA4Q9HCM2 1894 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 COL4A6Q14031 1691 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 MYBPHLA2RUH7 354 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 CGB1A6NKQ9 187 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 OR6C75A6NL08 312 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 F8VZ95 297 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 MED7O43513 233 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 NCK2O43639 380 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 ATP2C2O75185 946 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 USP1O94782 785 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 SERPING1P05155 500 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 URODP06132 367 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 CELA2AP08217 269 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 LINC00271P0C7V0 271 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 PNMA6AP0CW24 399 aaPredicted RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 CTSAP10619 480 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 SKILP12757 684 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 APEHP13798 732 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 CYP11B1P15538 503 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 ACAT1P24752 427 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 SLC5A2P31639 672 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 HNRNPH3P31942 346 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 HTR7P34969 479 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 OR1D2P34982 312 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 CA8P35219 290 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 GLUD2P49448 558 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 TSPY1Q01534 308 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 CFHR3Q02985 330 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 DEUP1Q05D60 604 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 GOLGA8FQ08AF8 430 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 GOLGA8DPQ0D2H9 430 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 KLHL30Q0D2K2 578 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 INCA1Q0VD86 236 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 SMARCB1Q12824 385 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 FHL3Q13643 280 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 PMS2P11Q13670 270 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 SMC1AQ14683 1233 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 ACOX1Q15067 660 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 LRIT3Q3SXY7 679 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 ABLIM2Q6H8Q1 611 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 FAM171BQ6P995 826 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 C1orf228Q6PIY5 440 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 PRSS55Q6UWB4 352 aaPredicted RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 C16orf54Q6UWD8 224 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 MMS22LQ6ZRQ5 1243 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 TOGARAM2Q6ZUX3 1019 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 SLC47A2Q86VL8 602 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 ZNF677Q86XU0 584 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 TMTC1Q8IUR5 882 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 GPR65Q8IYL9 337 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 RNF168Q8IYW5 571 aaPredicted RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 DCP1BQ8IZD4 617 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 OR2C3Q8N628 320 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 C12orf76Q8N812 135 aaPredicted RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 MRPL43Q8N983 215 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 C12orf29Q8N999 325 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 TC2NQ8N9U0 490 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 SLC4A11Q8NBS3 891 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 ZNF606Q8WXB4 792 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 ARNTL2Q8WYA1 636 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 DDB2Q92466 427 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 B3GALT6Q96L58 329 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 PANX2Q96RD6 677 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 TWNKQ96RR1 684 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 AGPAT1Q99943 283 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 RTP3Q9BQQ7 232 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.62□□□□□ -1.67
USP48-211ENST00000526044 HERC2P3Q9BVR0 1158 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 GPR88Q9GZN0 384 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 HAUS4Q9H6D7 363 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 ENTPD7Q9NQZ7 604 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.62□□□□□ -1.67
USP48-211ENST00000526044 ABHD10Q9NUJ1 306 aa4.62□□□□□ -1.67
USP48-211ENST00000526044 GAR1Q9NY12 217 aaKnown RBP4.62□□□□□ -1.67
USP48-211ENST00000526044 GTF3C4Q9UKN8 822 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms