RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 APCDD1Q8J025 514 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 ZNF366Q8N895 744 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 MCOLN3Q8TDD5 553 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 KIAA1191Q96A73 305 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 TRIM8Q9BZR9 551 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 POLR3HQ9Y535 204 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 ORC6Q9Y5N6 252 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 LOC285095A0A1B0GVY8 99 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 LCHNA4D1U4 455 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 SPAM1P38567 509 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 SGSHP51688 502 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 MTTPP55157 894 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 SH3BP2P78314 561 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 CBX2Q14781 532 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 CCSAPQ6IQ19 270 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 CHST9Q7L1S5 443 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 CNTN4Q8IWV2 1026 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 RIN3Q8TB24 985 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 TMEM159Q96B96 161 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 SLC22A12Q96S37 553 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 MRPS23Q9Y3D9 190 aaKnown RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 PCDHB1Q9Y5F3 818 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 AP4B1Q9Y6B7 739 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 RGS14O43566 566 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 TLL1O43897 1013 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 CLTBP09497 229 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 UQCRBP14927 111 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 HOXD9P28356 352 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 GGT5P36269 586 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 DIO3P55073 304 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 KRT33BQ14525 404 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 HSF5Q4G112 596 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 IL23RQ5VWK5 629 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 LHX8Q68G74 356 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 PRMT9Q6P2P2 845 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 SZRD1Q7Z422 152 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 NMD3Q96D46 503 aaKnown RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 ZNF419Q96HQ0 510 aaPredicted RBP10.06□□□□□ -0.8
MCF2-209ENST00000520602 C1QTNF1Q9BXJ1 281 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 BACE2Q9Y5Z0 518 aa10.06□□□□□ -0.8
MCF2-209ENST00000520602 LCTP09848 1927 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 OR2AG2A6NM03 316 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 FGF18O76093 207 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 LYNP07948 512 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 ATXN8OSP0DMR3 200 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 PCNAP12004 261 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 ITPKAP23677 461 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 DNAJB1P25685 340 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 DEFB103AP81534 67 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 CHRNB3Q05901 458 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 CEACAM7Q14002 265 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 CCNIQ14094 377 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 GRB7Q14451 532 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 STARD3Q14849 445 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 TTC33Q6PID6 262 aaPredicted RBP10.05□□□□□ -0.8
MCF2-209ENST00000520602 ZBTB2Q8N680 514 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 CPSF7Q8N684 471 aaKnown RBP10.05□□□□□ -0.8
MCF2-209ENST00000520602 MDGA1Q8NFP4 955 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 NRG4Q8WWG1 115 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 ACDQ96AP0 544 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 KLHL32Q96NJ5 620 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 MGME1Q9BQP7 344 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 ATG10Q9H0Y0 220 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 ADNPQ9H2P0 1102 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 NSUN3Q9H649 340 aaKnown RBP10.05□□□□□ -0.8
MCF2-209ENST00000520602 LEF1Q9UJU2 399 aaPredicted RBP10.05□□□□□ -0.8
MCF2-209ENST00000520602 LRATO95237 230 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 FKBP9O95302 570 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 CPSF4O95639 269 aaKnown RBP10.05□□□□□ -0.8
MCF2-209ENST00000520602 FAM58BPP0C7Q3 252 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 UROSP10746 265 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 ATP6V1B2P21281 511 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 HSPA13P48723 471 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 APLP1P51693 650 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SATB1Q01826 763 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 GTF2H2Q13888 395 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 C6orf52Q5T4I8 152 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SLC8B1Q6J4K2 584 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 GTF2H2CQ6P1K8 395 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SLC30A9Q6PML9 568 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SLC39A5Q6ZMH5 540 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 FKBP9P1Q75LS8 142 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 LSMEM2Q8N112 164 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SHKBP1Q8TBC3 707 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 BCL7CQ8WUZ0 217 aaPredicted RBP10.05□□□□□ -0.8
MCF2-209ENST00000520602 LRTOMTQ8WZ04 291 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 CCDC90BQ9GZT6 254 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 ABHD14A-ACY1A0A1B0GW23 586 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 MYO1GB0I1T2 1018 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SMAD6O43541 496 aaKnown RBP10.05□□□□□ -0.8
MCF2-209ENST00000520602 NCK1P16333 377 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 FDXRP22570 491 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SLC26A3P40879 764 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 KCNC1P48547 511 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 IRF8Q02556 426 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 GTF2H3Q13889 308 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 SEMA3AQ14563 771 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 Q6ZVU0 165 aa10.05□□□□□ -0.8
MCF2-209ENST00000520602 UBE2R2Q712K3 238 aaPredicted RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms