RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 TFR2Q9UP52 801 aa17.24■□□□□ 0.35
DDX41-217ENST00000515562 PCDHGA4Q9Y5G9 962 aa17.24■□□□□ 0.35
DDX41-217ENST00000515562 SDK2Q58EX2 2172 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 EFCAB7A8K855 629 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 PDZK1P1A8MUH7 402 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 PPFIA2O75334 1257 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 MTX2O75431 263 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 NDUFA10O95299 355 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 ITGB2P05107 769 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 ZNF7P17097 686 aaPredicted RBP17.23■□□□□ 0.35
DDX41-217ENST00000515562 VCLP18206 1134 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 CTNNA1P35221 906 aaKnown RBP17.23■□□□□ 0.35
DDX41-217ENST00000515562 SPAM1P38567 509 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 MAPK9P45984 424 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 SRSF6Q13247 344 aaKnown RBP17.23■□□□□ 0.35
DDX41-217ENST00000515562 LY6DQ14210 128 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 SLC1A5Q15758 541 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 ATP13A5Q4VNC0 1218 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 CCDC181Q5TID7 509 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 TTC30BQ8N4P2 665 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 BMPERQ8N8U9 685 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 IPMKQ8NFU5 416 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 GDAP1Q8TB36 358 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 BRSK1Q8TDC3 778 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 PMEPA1Q969W9 287 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 MED8Q96G25 268 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 MRFAP1L1Q96HT8 127 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 BPIFA1Q9NP55 256 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 POT1Q9NUX5 634 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 EFR3BQ9Y2G0 817 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 B3GALT1Q9Y5Z6 326 aa17.23■□□□□ 0.35
DDX41-217ENST00000515562 MN1Q10571 1320 aaPredicted RBP17.22■□□□□ 0.35
DDX41-217ENST00000515562 VIPP01282 170 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 XRCC1P18887 633 aaPredicted RBP17.22■□□□□ 0.35
DDX41-217ENST00000515562 FECHP22830 423 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 CHRNA4P43681 627 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 ARSDP51689 593 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 ITGA9Q13797 1035 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 NOMO1Q15155 1222 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 KHDC1Q4VXA5 237 aaKnown RBP17.22■□□□□ 0.35
DDX41-217ENST00000515562 SNAP47Q5SQN1 464 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 ITPRIPL1Q6GPH6 555 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 ARHGAP22Q7Z5H3 698 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 ZNF605Q86T29 641 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 PLXDC1Q8IUK5 500 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 TRAPPC5Q8IUR0 188 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 TMTC1Q8IUR5 882 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 ZNF547Q8IVP9 402 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 SLC25A41Q8N5S1 370 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 BLOC1S5Q8TDH9 187 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 TTC25Q96NG3 672 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 ZPBPQ9BS86 351 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 HEMGNQ9BXL5 484 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 GBA3Q9H227 469 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 IL26Q9NPH9 171 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 OCIAD1Q9NX40 245 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 IL17CQ9P0M4 197 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 SLC23A2Q9UGH3 650 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 DNAJC16Q9Y2G8 782 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 PKP3Q9Y446 797 aa17.22■□□□□ 0.35
DDX41-217ENST00000515562 EPN1Q9Y6I3 576 aaPredicted RBP17.22■□□□□ 0.35
DDX41-217ENST00000515562 GLYATL1P3A0A0U1RQE8 302 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 MACROD2A1Z1Q3 448 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 CCDC66A2RUB6 948 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 PRR19A6NJB7 356 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 SOWAHDA6NJG2 315 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 F5H423 210 aaPredicted RBP17.21■□□□□ 0.35
DDX41-217ENST00000515562 H7C0C1 242 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 ANXA9O76027 345 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 ANKRD34CP0C6C1 535 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 IDSP22304 550 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 PTPN7P35236 360 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 ATP5OP48047 213 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 ZNF75DP51815 510 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 GEMP55040 296 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 TMEM115Q12893 351 aaPredicted RBP17.21■□□□□ 0.35
DDX41-217ENST00000515562 SEPT7Q16181 437 aaKnown RBP17.21■□□□□ 0.35
DDX41-217ENST00000515562 LDLRAP1Q5SW96 308 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 AGAP9Q5VTM2 703 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 ANKS6Q68DC2 871 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 XKR5Q6UX68 686 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 WASH2PQ6VEQ5 465 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 TMEM26Q6ZUK4 368 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 CDKL3Q8IVW4 592 aaPredicted RBP17.21■□□□□ 0.35
DDX41-217ENST00000515562 RBM12BQ8IXT5 1001 aaKnown RBP17.21■□□□□ 0.35
DDX41-217ENST00000515562 IL22RA1Q8N6P7 574 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 NKD1Q969G9 470 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 TBC1D10AQ9BXI6 508 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 SEMA4CQ9C0C4 833 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 WASH6PQ9NQA3 447 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 TMPRSS11EQ9UL52 423 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 PCDHA3Q9Y5H8 950 aa17.21■□□□□ 0.35
DDX41-217ENST00000515562 GCN1Q92616 2671 aaKnown RBP17.21■□□□□ 0.35
DDX41-217ENST00000515562 A8MU76 341 aa17.2■□□□□ 0.34
DDX41-217ENST00000515562 BTNL10A8MVZ5 291 aa17.2■□□□□ 0.34
DDX41-217ENST00000515562 PJA2O43164 708 aa17.2■□□□□ 0.34
DDX41-217ENST00000515562 KCNJ13O60928 360 aa17.2■□□□□ 0.34
DDX41-217ENST00000515562 ZNF189O75820 626 aaPredicted RBP17.2■□□□□ 0.34
DDX41-217ENST00000515562 STK10O94804 968 aaKnown RBP17.2■□□□□ 0.34
DDX41-217ENST00000515562 PLA2G2AP14555 144 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms