RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 KHDC1Q4VXA5 237 aaKnown RBP14.08□□□□□ -0.16
NUP54-216ENST00000514901 OGFOD3Q6PK18 319 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 CHST15Q7LFX5 561 aaPredicted RBP14.08□□□□□ -0.16
NUP54-216ENST00000514901 ERMP1Q7Z2K6 904 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 SERPINA9Q86WD7 417 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 NRROSQ86YC3 692 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 ARL10Q8N8L6 244 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 RASGEF1AQ8N9B8 481 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 OR6C4Q8NGE1 309 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 OR4L1Q8NH43 312 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 CCL4L1Q8NHW4 92 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 ZNF778Q96MU6 729 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 TIMM29Q9BSF4 260 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 TRIM51Q9BSJ1 452 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 NAT9Q9BTE0 207 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 RAB17Q9H0T7 212 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 DPEP2Q9H4A9 486 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 FAM96AQ9H5X1 160 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 TAAR2Q9P1P5 351 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 SLC2A6Q9UGQ3 507 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 ANAPC5Q9UJX4 755 aa14.08□□□□□ -0.16
NUP54-216ENST00000514901 UTP11Q9Y3A2 253 aaKnown RBP14.08□□□□□ -0.16
NUP54-216ENST00000514901 CACNA1AO00555 2505 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 IGLV3-16A0A075B6K0 115 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 SPAARA0A1B0GVQ0 90 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 F8W8V4 182 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 GPR39O43194 453 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 RAD51CO43502 376 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 SEC31AO94979 1220 aaKnown RBP14.07□□□□□ -0.16
NUP54-216ENST00000514901 TRIM16O95361 564 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 GOT2P00505 430 aaKnown RBP14.07□□□□□ -0.16
NUP54-216ENST00000514901 ATP1B2P14415 290 aaPredicted RBP14.07□□□□□ -0.16
NUP54-216ENST00000514901 ZNF7P17097 686 aaPredicted RBP14.07□□□□□ -0.16
NUP54-216ENST00000514901 FOXN2P32314 431 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 ACTR1BP42025 376 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 ITGA8P53708 1063 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 ACTR1AP61163 376 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 E2F1Q01094 437 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 CALCOCO2Q13137 446 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 ITIH4Q14624 930 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 TCEA2Q15560 299 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 FASTKD1Q53R41 847 aaKnown RBP14.07□□□□□ -0.16
NUP54-216ENST00000514901 AARS2Q5JTZ9 985 aaKnown RBP14.07□□□□□ -0.16
NUP54-216ENST00000514901 HIBCHQ6NVY1 386 aaPredicted RBP14.07□□□□□ -0.16
NUP54-216ENST00000514901 SLC30A9Q6PML9 568 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 TMEM220Q6QAJ8 160 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 TRAPPC5Q8IUR0 188 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 PDIK1LQ8N165 341 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 MPP5Q8N3R9 675 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 NAT6Q93015 286 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 SIGLEC10Q96LC7 697 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 WHRNQ9P202 907 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 GULP1Q9UBP9 304 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 PRKAB1Q9Y478 270 aa14.07□□□□□ -0.16
NUP54-216ENST00000514901 ASXL3Q9C0F0 2248 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 MYLKQ15746 1914 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 CTAGE15A4D2H0 777 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 EME2A4GXA9 379 aaPredicted RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 OR5K4A6NMS3 321 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 QSOX1O00391 747 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 PFDN6O15212 129 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 POP7O75817 140 aaKnown RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 AP2A2O94973 939 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 GP1BAP07359 652 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 GSTM1P09488 218 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 FTH1P19P0C7X4 201 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 CTAGE8P0CG41 777 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 ACP5P13686 325 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 SLC2A4P14672 509 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 KCNA4P22459 653 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 AK4P27144 223 aaPredicted RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 NMBRP28336 390 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 CA5AP35218 305 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 NSG1P42857 185 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 RPL21P46778 160 aaKnown RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 DRG2P55039 364 aaKnown RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 GSTM4Q03013 218 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 INSCQ1MX18 579 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 BCL7AQ4VC05 210 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 KIAA0930Q6ICG6 404 aaPredicted RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 CRTC3Q6UUV7 619 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 PACS1Q6VY07 963 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 TMEM135Q86UB9 458 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 CTAGE6Q86UF2 777 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 AMZ2Q86W34 360 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 CCNJLQ8IV13 435 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 ZNF547Q8IVP9 402 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 CTAGE4Q8IX94 777 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 SLC35F3Q8IY50 421 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 PIANPQ8IYJ0 282 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 GPR156Q8NFN8 814 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 ZDHHC1Q8WTX9 485 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 LRRC39Q96DD0 335 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 MFSD3Q96ES6 412 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 STAMBPL1Q96FJ0 436 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 LINC00615Q96LM1 132 aaPredicted RBP14.06□□□□□ -0.16
NUP54-216ENST00000514901 TRIM31Q9BZY9 425 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 VPS37BQ9H9H4 285 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 KLC4Q9NSK0 619 aa14.06□□□□□ -0.16
NUP54-216ENST00000514901 CATSPERZQ9NTU4 200 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms