RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 KCTD5Q9NXV2 234 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 MRPS7Q9Y2R9 242 aaKnown RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 J3KR12 359 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 KLF11O14901 512 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 FADS2O95864 444 aaKnown RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 GPIP06744 558 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 ELFN1P0C7U0 828 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 CDK9P50750 372 aaKnown RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 SPRYD7Q5W111 196 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 TRIM40Q6P9F5 258 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 PRSS55Q6UWB4 352 aaPredicted RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 PIM3Q86V86 326 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 DBF4BQ8NFT6 615 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 OR52J3Q8NH60 311 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 ASZ1Q8WWH4 475 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 UBE2E3Q969T4 207 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 MOCOSQ96EN8 888 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 CD84Q9UIB8 345 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 FBXO10Q9UK96 956 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 ERGIC3Q9Y282 383 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 E7ENX8 843 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 RFPL1O75677 317 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 IVDP26440 423 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 HTR7P34969 479 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 MAPK9P45984 424 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 NDST2P52849 883 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 PAGE2Q7Z2X7 111 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 SLCO6A1Q86UG4 719 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 UXS1Q8NBZ7 420 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 TDRD1Q9BXT4 1180 aaKnown RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 SPRTNQ9H040 489 aaPredicted RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 SGK2Q9HBY8 427 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 GKN1Q9NS71 199 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 CLN6Q9NWW5 311 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 PDP1Q9P0J1 537 aaPredicted RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 CYTH4Q9UIA0 394 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 PSME2Q9UL46 239 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 ANGPT4Q9Y264 503 aa12.57□□□□□ -0.4
USP53-209ENST00000514665 ARIH1Q9Y4X5 557 aaPredicted RBP12.57□□□□□ -0.4
USP53-209ENST00000514665 ARFGEF2Q9Y6D5 1785 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 EI24O14681 340 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 NTSP30990 170 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 MAGEA10P43363 369 aaPredicted RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 YAP1P46937 504 aaKnown RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 PTSQ03393 145 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 TCEAL1Q15170 157 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 SIX1Q15475 284 aaPredicted RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 LRRC73Q5JTD7 316 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 ZNF697Q5TEC3 545 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 LYPLAL1Q5VWZ2 237 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 FBXL22Q6P050 247 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 DEF8Q6ZN54 512 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 ARL10Q8N8L6 244 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 MCFD2Q8NI22 146 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 USP7Q93009 1102 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 MYDGFQ969H8 173 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 PPCDCQ96CD2 204 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 MAF1Q9H063 256 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CRISPLD1Q9H336 500 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 IGFLR1Q9H665 355 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 DNAJC11Q9NVH1 559 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 VPS4AQ9UN37 437 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 A0A1W2PQ67 120 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CLDN9O95484 217 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 UMPSP11172 480 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 ACADMP11310 421 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 IGFBP5P24593 272 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CCR4P51679 360 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CDH15P55291 814 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CSNK2BP67870 215 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 INCA1Q0VD86 236 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 GTF2H2Q13888 395 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 GTF2H2CQ6P1K8 395 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 MACC1Q6ZN28 852 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 ZBTB2Q8N680 514 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 ARL14EPQ8N8R7 260 aaPredicted RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 HAPLN3Q96S86 360 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 NPY6RQ99463 290 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 KIAA1522Q9P206 1035 aaPredicted RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 GALPQ9UBC7 116 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 DPP7Q9UHL4 492 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 SPATA2Q9UM82 520 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 KCTD3Q9Y597 815 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 RGPD2P0DJD1 1756 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 ANGPTL1O95841 491 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 JAK1P23458 1154 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CTSKP43235 329 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 FKBP1BP68106 108 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CACNG1Q06432 222 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 NOL9Q5SY16 702 aaKnown RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 DEPDC4Q8N2C3 294 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 TMEM130Q8N3G9 435 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CXorf40AQ8TE69 158 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 ZNF483Q8TF39 744 aaPredicted RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 USP29Q9HBJ7 922 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 CNTN3Q9P232 1028 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 GIMAP2Q9UG22 337 aa12.56□□□□□ -0.4
USP53-209ENST00000514665 SAMD4AQ9UPU9 718 aaKnown RBP12.56□□□□□ -0.4
USP53-209ENST00000514665 GLTPD2A6NH11 291 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 UGT1A6P19224 532 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms