RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 ASCL3Q9NQ33 180 aa14.06□□□□□ -0.16
HOXC9-202ENST00000504557 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.06□□□□□ -0.16
HOXC9-202ENST00000504557 NFKBIL1Q9UBC1 381 aaPredicted RBP14.06□□□□□ -0.16
HOXC9-202ENST00000504557 LOXL2Q9Y4K0 774 aa14.06□□□□□ -0.16
HOXC9-202ENST00000504557 FAM208BQ5VWN6 2430 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 A0A087WV48 116 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 C5orf60A6NFR6 353 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 A8MU76 341 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 TMX2-CTNND1H3BSU7 103 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 NRDCO43847 1150 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 HOXB3P14651 431 aaPredicted RBP14.05□□□□□ -0.16
HOXC9-202ENST00000504557 CD1CP29017 333 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 LMAN1P49257 510 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 CCZ1BP86790 482 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 CCZ1P86791 482 aaPredicted RBP14.05□□□□□ -0.16
HOXC9-202ENST00000504557 ITGA9Q13797 1035 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 GPRC6AQ5T6X5 926 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 MEI1Q5TIA1 1274 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 IYDQ6PHW0 289 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 RANBP10Q6VN20 620 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 ZNF438Q7Z4V0 828 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 SLC9B2Q86UD5 537 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 SLC13A5Q86YT5 568 aaPredicted RBP14.05□□□□□ -0.16
HOXC9-202ENST00000504557 ZNF248Q8NDW4 579 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 SNIP1Q8TAD8 396 aaKnown RBP14.05□□□□□ -0.16
HOXC9-202ENST00000504557 SLC35B2Q8TB61 432 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 KCNE4Q8WWG9 221 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 GRAMD1AQ96CP6 724 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 LIN37Q96GY3 246 aaPredicted RBP14.05□□□□□ -0.16
HOXC9-202ENST00000504557 PRR11Q96HE9 360 aaPredicted RBP14.05□□□□□ -0.16
HOXC9-202ENST00000504557 CCDC74BQ96LY2 380 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 SLC46A1Q96NT5 459 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 VPS35Q96QK1 796 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 TMEM9Q9P0T7 183 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 SCHIP1Q9P0W5 487 aaPredicted RBP14.05□□□□□ -0.16
HOXC9-202ENST00000504557 KLHL3Q9UH77 587 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 ZNF148Q9UQR1 794 aa14.05□□□□□ -0.16
HOXC9-202ENST00000504557 IGHV1OR21-1A0A087WYE8 117 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 GAPDHSO14556 408 aaPredicted RBP14.04□□□□□ -0.16
HOXC9-202ENST00000504557 CHUKO15111 745 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 KLK10O43240 276 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 VEGFDO43915 354 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 CRTAMO95727 393 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 F3P13726 295 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 SLC2A4P14672 509 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 MSH3P20585 1137 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 CCKBRP32239 447 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 CSF2RBP32927 897 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 CTSCP53634 463 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 POU6F1Q14863 301 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 C16orf72Q14CZ0 275 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 KCTD19Q17RG1 926 aaPredicted RBP14.04□□□□□ -0.16
HOXC9-202ENST00000504557 PARP6Q2NL67 630 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 LDLRAP1Q5SW96 308 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 ZDHHC20Q5W0Z9 365 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 TMEM220Q6QAJ8 160 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 ZNF574Q6ZN55 896 aaPredicted RBP14.04□□□□□ -0.16
HOXC9-202ENST00000504557 PDZD3Q86UT5 571 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 ZNF547Q8IVP9 402 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 SLITRK4Q8IW52 837 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 SPACA3Q8IXA5 215 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 BEND7Q8N7W2 519 aaPredicted RBP14.04□□□□□ -0.16
HOXC9-202ENST00000504557 RASGEF1AQ8N9B8 481 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 OR10G6Q8NH81 332 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 ZNF398Q8TD17 642 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 NCSTNQ92542 709 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 TBC1D10AQ9BXI6 508 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 ZCCHC2Q9C0B9 1178 aaKnown RBP14.04□□□□□ -0.16
HOXC9-202ENST00000504557 ASB8Q9H765 288 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.04□□□□□ -0.16
HOXC9-202ENST00000504557 CPNE7Q9UBL6 633 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 CRLS1Q9UJA2 301 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 PSMD13Q9UNM6 376 aa14.04□□□□□ -0.16
HOXC9-202ENST00000504557 PTPRQQ9UMZ3 2332 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 PRAMEF33A0A0G2JMD5 474 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 IGHV5-10-1A0A0J9YXX1 117 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 GPR89AB7ZAQ6 455 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 LIASO43766 372 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 SRP72O76094 671 aaKnown RBP14.03□□□□□ -0.16
HOXC9-202ENST00000504557 DXOO77932 396 aaKnown RBP14.03□□□□□ -0.16
HOXC9-202ENST00000504557 GPR89BP0CG08 455 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 ETS1P14921 441 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 IDSP22304 550 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 SLC5A2P31639 672 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 CXCR5P32302 372 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 ETV5P41161 510 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 GPR3P46089 330 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 FASLGP48023 281 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 ERVPABLB-1P60509 514 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 ZFP36L1Q07352 338 aaKnown RBP14.03□□□□□ -0.16
HOXC9-202ENST00000504557 P3H1Q32P28 736 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 FNBP1LQ5T0N5 605 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 DENND5AQ6IQ26 1287 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 BRSK1Q8TDC3 778 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 DNAJC1Q96KC8 554 aaKnown RBP14.03□□□□□ -0.16
HOXC9-202ENST00000504557 PPP1R2P1Q96PQ5 205 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 CMKLR1Q99788 373 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 LRRC40Q9H9A6 602 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 GRPEL1Q9HAV7 217 aa14.03□□□□□ -0.16
HOXC9-202ENST00000504557 AKAP7Q9P0M2 348 aaPredicted RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms