RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 SLCO2A1Q92959 643 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 SH3KBP1Q96B97 665 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A7Q9HAW7 530 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A10Q9HAW8 530 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 UGT1A8Q9HAW9 530 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 PLEKHM1Q9Y4G2 1056 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 AK5Q9Y6K8 562 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 GOLGA4Q13439 2230 aaKnown RBP16.16■□□□□ 0.18
SF3A1-209ENST00000496189 PTPRBP23467 1997 aa16.16■□□□□ 0.18
SF3A1-209ENST00000496189 KIR2DS5A0A0G2JLQ3 304 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 A0A0G2JNG1 304 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 PDZK1P1A8MUH7 402 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 KIR2DS3K7RE56 304 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 CSO75390 466 aaKnown RBP16.15■□□□□ 0.18
SF3A1-209ENST00000496189 URI1O94763 535 aaPredicted RBP16.15■□□□□ 0.18
SF3A1-209ENST00000496189 IDSP22304 550 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 VPS41P49754 854 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 CLCNKAP51800 687 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 MAZP56270 477 aaKnown RBP16.15■□□□□ 0.18
SF3A1-209ENST00000496189 CLDN6P56747 220 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 DR1Q01658 176 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 CKAP4Q07065 602 aaKnown RBP16.15■□□□□ 0.18
SF3A1-209ENST00000496189 TUBB2AQ13885 445 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 PTPRCAPQ14761 206 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 KIR2DS5Q14953 304 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 TRIM48Q8IWZ4 208 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 ARL14Q8N4G2 192 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 PPHLN1Q8NEY8 458 aaKnown RBP16.15■□□□□ 0.18
SF3A1-209ENST00000496189 ZCCHC14Q8WYQ9 949 aaKnown RBP16.15■□□□□ 0.18
SF3A1-209ENST00000496189 TTC1Q99614 292 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 TUBB2BQ9BVA1 445 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 STRADBQ9C0K7 418 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 NRSN2Q9GZP1 204 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 NLE1Q9NVX2 485 aaPredicted RBP16.15■□□□□ 0.18
SF3A1-209ENST00000496189 KCTD3Q9Y597 815 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 RNF215Q9Y6U7 377 aa16.15■□□□□ 0.18
SF3A1-209ENST00000496189 KLHL33A6NCF5 533 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 TRABD2BA6NFA1 517 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 LDB2O43679 373 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 F3P13726 295 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 TPSB2P20231 275 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 ADRA1DP25100 572 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 ALDH4A1P30038 563 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 MC4RP32245 332 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 HALP42357 657 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 GPR3P46089 330 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 DHX34Q14147 1143 aaKnown RBP16.14■□□□□ 0.17
SF3A1-209ENST00000496189 TPSAB1Q15661 275 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 CDCP2Q5VXM1 449 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 TAS2R42Q7RTR8 314 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 NAGSQ8N159 534 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 KIF18AQ8NI77 898 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 AHCYL2Q96HN2 611 aaKnown RBP16.14■□□□□ 0.17
SF3A1-209ENST00000496189 DNAJC1Q96KC8 554 aaKnown RBP16.14■□□□□ 0.17
SF3A1-209ENST00000496189 SLC38A3Q99624 504 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 COPS8Q99627 209 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.14■□□□□ 0.17
SF3A1-209ENST00000496189 LRRN3Q9H3W5 708 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 VPS37BQ9H9H4 285 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 PIH1D1Q9NWS0 290 aaKnown RBP16.14■□□□□ 0.17
SF3A1-209ENST00000496189 BFARQ9NZS9 450 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 ASIC3Q9UHC3 531 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 CDC23Q9UJX2 597 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 DNAJC16Q9Y2G8 782 aa16.14■□□□□ 0.17
SF3A1-209ENST00000496189 DNMT3AQ9Y6K1 912 aaPredicted RBP16.14■□□□□ 0.17
SF3A1-209ENST00000496189 CEP295Q9C0D2 2601 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 OR2AG2A6NM03 316 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 F8W8V4 182 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 H7C0S8 307 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 PPARGP37231 505 aaPredicted RBP16.13■□□□□ 0.17
SF3A1-209ENST00000496189 CCL7P80098 99 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 HHEXQ03014 270 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 MSLNQ13421 630 aaPredicted RBP16.13■□□□□ 0.17
SF3A1-209ENST00000496189 ST3GAL2Q16842 350 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 WHAMMP3Q1A5X7 153 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 ISXQ2M1V0 245 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 MAP9Q49MG5 647 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 TMEM220Q6QAJ8 160 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 SPRED1Q7Z699 444 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 PCGF5Q86SE9 256 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 PIM3Q86V86 326 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 AMZ2Q86W34 360 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 C17orf82Q86X59 251 aaPredicted RBP16.13■□□□□ 0.17
SF3A1-209ENST00000496189 NXPE1Q8N323 547 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 SFRP1Q8N474 314 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 SPATA4Q8NEY3 305 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 TMEM74Q96NL1 305 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 RANBP9Q96S59 729 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 CASS4Q9NQ75 786 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 KCNK4Q9NYG8 393 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 NEU2Q9Y3R4 380 aa16.13■□□□□ 0.17
SF3A1-209ENST00000496189 TRBV23OR9-2A0A075B6M9 112 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 D6RAR5 112 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 NTN3O00634 580 aaPredicted RBP16.12■□□□□ 0.17
SF3A1-209ENST00000496189 GAPDHSO14556 408 aaPredicted RBP16.12■□□□□ 0.17
SF3A1-209ENST00000496189 NDC80O14777 642 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 MAGEA6P43360 314 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 FASLGP48023 281 aa16.12■□□□□ 0.17
SF3A1-209ENST00000496189 NPY2RP49146 381 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms