RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-222ENST00000493919 RRN3Q9NYV6 651 aa11.52□□□□□ -0.56
BRCA1-222ENST00000493919 CCDC160A6NGH7 325 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 LINC01387J3KSC0 135 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 TAF4O00268 1085 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 AP3D1O14617 1153 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 OPHN1O60890 802 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ANXA6P08133 673 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 PFKLP17858 780 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ITGALP20701 1170 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ATP5C1P36542 298 aaKnown RBP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 GPC5P78333 572 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 POU6F2P78424 691 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 SLC7A9P82251 487 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 TARDBPQ13148 414 aaKnown RBP eCLIP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 HNRNPDQ14103 355 aaKnown RBP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 PPP2R5DQ14738 602 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 MTF1Q14872 753 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 TRADDQ15628 312 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ZNF77Q15935 545 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 TNFAIP8L3Q5GJ75 292 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ZNF569Q5MCW4 686 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ERMARDQ5T6L9 678 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 BSPRYQ5W0U4 402 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 PRMT9Q6P2P2 845 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ALKBH5Q6P6C2 394 aaKnown RBP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 PRR23BQ6ZRT6 265 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 FAM183BPQ6ZVS7 135 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 IRF2BP2Q7Z5L9 587 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 MFSD6LQ8IWD5 586 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 SLC30A5Q8TAD4 765 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 DENND1AQ8TEH3 1009 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 TANKQ92844 425 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 C19orf60Q96EN9 201 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ZDHHC12Q96GR4 267 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 VPS39Q96JC1 886 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 LRRC3BQ96PB8 259 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 CDK5RAP1Q96SZ6 601 aaKnown RBP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 C11orf70Q9BRQ4 267 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 TP63Q9H3D4 680 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 SYNDIG1Q9H7V2 258 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 GIMAP4Q9NUV9 329 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 CFAP97Q9P2B7 532 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 EIF2B4Q9UI10 523 aaKnown RBP11.52□□□□□ -0.57
BRCA1-222ENST00000493919 DNMT3LQ9UJW3 386 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 TLK1Q9UKI8 766 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 POU2F3Q9UKI9 436 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 FBXL21Q9UKT6 434 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 CAPN11Q9UMQ6 739 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 GMPPBQ9Y5P6 360 aa11.52□□□□□ -0.57
BRCA1-222ENST00000493919 ZSCAN5CA6NGD5 496 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 LEFTY2O00292 366 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 CAPN9O14815 690 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 ZNF263O14978 683 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 GRAP2O75791 330 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 HMBSP08397 361 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 SRFP11831 508 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 RFC1P35251 1148 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 ETV5P41161 510 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 NSFP46459 744 aaKnown RBP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 SLCO1A2P46721 670 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 RPL34P49207 117 aaKnown RBP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 C21orf59P57076 290 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 ZXDBP98169 803 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 NAB1Q13506 487 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 TRIM72Q6ZMU5 477 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 ZDHHC17Q8IUH5 632 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 VANGL1Q8TAA9 524 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 PLEKHA8Q96JA3 519 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 PCDHB18PQ96TA0 734 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 MCMBPQ9BTE3 642 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 ZSCAN5AQ9BUG6 496 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 TDRD1Q9BXT4 1180 aaKnown RBP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 GKN1Q9NS71 199 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 ABCC13Q9NSE7 274 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 THG1LQ9NWX6 298 aaKnown RBP11.51□□□□□ -0.57
BRCA1-222ENST00000493919 OBP2AQ9NY56 170 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 CA14Q9ULX7 337 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 TICRRQ7Z2Z1 1910 aa11.51□□□□□ -0.57
BRCA1-222ENST00000493919 SCGB1D2O95969 90 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 HRGP04196 525 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 DNAJA1P31689 397 aaKnown RBP11.5□□□□□ -0.57
BRCA1-222ENST00000493919 CCR10P46092 362 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 RASSF2P50749 326 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 RENBPP51606 427 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 ZXDAP98168 799 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 XIAPP98170 497 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 RAPSNQ13702 412 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 FASTKD3Q14CZ7 662 aaKnown RBP11.5□□□□□ -0.57
BRCA1-222ENST00000493919 CLEC16AQ2KHT3 1053 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 FAM102AQ5T9C2 384 aaPredicted RBP11.5□□□□□ -0.57
BRCA1-222ENST00000493919 RAB11FIP2Q7L804 512 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 HDDC2Q7Z4H3 204 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 LRRC6Q86X45 466 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 UBALD2Q8IYN6 164 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 ADGRG2Q8IZP9 1017 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 SCML4Q8N228 414 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 PGBD3Q8N328 593 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 PLD5Q8N7P1 536 aa11.5□□□□□ -0.57
BRCA1-222ENST00000493919 ASCC1Q8N9N2 400 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms