RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 A0A0B4J203 849 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 C5orf51A6NDU8 294 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 A8MVJ9 347 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CACNB4O00305 520 aaPredicted RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ABCC3O15438 1527 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 PRAMEF2O60811 474 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 GBAP04062 536 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CTSAP10619 480 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 SFTPCP11686 197 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 PDGFRAP16234 1089 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ADRA1DP25100 572 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 PON1P27169 355 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 TAGLN2P37802 199 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 BMXP51813 675 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CAPZA1P52907 286 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 GPC5P78333 572 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 PRAMEP78395 509 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ROCK1Q13464 1354 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 MYLK3Q32MK0 819 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 DPCR1Q3MIW9 517 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 TMEM63BQ5T3F8 832 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 SLC25A24Q6NUK1 477 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 SARM1Q6SZW1 724 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 FIP1L1Q6UN15 594 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 GLDNQ6ZMI3 551 aaPredicted RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ERN2Q76MJ5 926 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 KCTD9Q7L273 389 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 FAM219AQ8IW50 185 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 RTL3Q8N8U3 475 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 PNPLA1Q8N8W4 532 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 MRPL43Q8N983 215 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 BANPQ8N9N5 519 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 NHLRC2Q8NBF2 726 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ATAD1Q8NBU5 361 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ZNF548Q8NEK5 533 aaPredicted RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CFAP61Q8NHU2 1237 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 FBXO30Q8TB52 745 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 RNF139Q8WU17 664 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CHURC1Q8WUH1 139 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 KAT2AQ92830 837 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 SMARCE1Q969G3 411 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 BICD1Q96G01 975 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CDRT15Q96T59 188 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 MLPHQ9BV36 600 aaPredicted RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 KIFC3Q9BVG8 833 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 IFIH1Q9BYX4 1025 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ACPTQ9BZG2 426 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 TASP1Q9H6P5 420 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CLSPNQ9HAW4 1339 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 IL1RAPL2Q9NP60 686 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 DUOX2Q9NRD8 1548 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 PAPOLBQ9NRJ5 636 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ARHGEF38Q9NXL2 777 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 GDE1Q9NZC3 331 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 IL1RAPL1Q9NZN1 696 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 NCKIPSDQ9NZQ3 722 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CACNA1IQ9P0X4 2223 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 NLKQ9UBE8 527 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ZMYM2Q9UBW7 1377 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 STEAP1Q9UHE8 339 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 ANKRD50Q9ULJ7 1429 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 FZD4Q9ULV1 537 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 VPS4AQ9UN37 437 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 UBE2J1Q9Y385 318 aaPredicted RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 C2CD2Q9Y426 696 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 C3P01024 1663 aa3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 CLTCQ00610 1675 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 RNF17Q9BXT8 1623 aaKnown RBP3.2□□□□□ -1.9
DEPDC1-204ENST00000489862 PLA2R1Q13018 1463 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 NPATQ14207 1427 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 ANKRD30AQ9BXX3 1397 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 KDM4EB2RXH2 506 aaPredicted RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 AP3B1O00203 1094 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 WDR46O15213 610 aaKnown RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 STX6O43752 255 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 MITFO75030 526 aaPredicted RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 NKX2-2O95096 273 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 PDGFBP01127 241 aaPredicted RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 MBPP02686 304 aaPredicted RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 CHRM4P08173 479 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 OR52Z1P0C646 297 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 AZGP1P25311 298 aaKnown RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 CD27P26842 260 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 FMO4P31512 558 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 ACAA2P42765 397 aaKnown RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 ARSFP54793 590 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 HNRNPKP61978 463 aaKnown RBP eCLIP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 RPS13P62277 151 aaKnown RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 SHC2P98077 582 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 ECT2LQ008S8 904 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 BEX3Q00994 111 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 PMP22Q01453 160 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 MECOMQ03112 1051 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 SCN1BQ07699 218 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 MZT1Q08AG7 82 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 KPNB1Q14974 876 aaKnown RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 CEP55Q53EZ4 464 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 LRIF1Q5T3J3 769 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 CCDC183Q5T5S1 534 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 TEX38Q6PEX7 206 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms